Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01816 ATGAACAGCAGCGAATCTTGCTTCTCCCAGGAAGCCATTTTCAGAGTTGTTGCTGCAATTCTTCATCTGGGTAATATTGACTTTGCCAAAGGAAAGGAAATTGACTCATCAATTCCAAAAGACGACAAAGCCAAATTCCACTTGAAAACAGCCGCTGAACTTCTGATGTGTGATGCTGATGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACTCCTGAAGAAGTTATAACGCGGAGCCTTGATCCGGGAAGTGCTACAGTCAGTAGAGATGGACTGGCAAAAACAATTTATTCTCGGTTATTTGATTGGCTGGTGGACAAGATCAATAATTCAATTGGACAAGATCCCAATTCTAAATGTTTGATCGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATTGAACAGTTTTGAGCAGTTCTTCATTAATTTCCCAAATGAAAAGTTGCAGCAACACTTCAATCAGCACATGTTCAAAATGGAACAAGAAGAATACACAAAGGAGCAGATCGATTGGAGCTACATTGAATTTGAGGACAACCAAGATGTTTTGGACCTTATTGAAAAGGTTTTCTTTCTCCTTTTTCACTTTCTCTAA 606 0.3911 MNSSESCFSQEAIFRVVAAILHLGNIDFAKGKEIDSSIPKDDKAKFHLKTAAELLMCDADALEDALCKRVMITPEEVITRSLDPGSATVSRDGLAKTIYSRLFDWLVDKINNSIGQDPNSKCLIGVLDIYGFESFKLNSFEQFFINFPNEKLQQHFNQHMFKMEQEEYTKEQIDWSYIEFEDNQDVLDLIEKVFFLLFHFL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01816 201 ProSiteProfiles Myosin motor domain profile. 1 201 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01816 201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 193 IPR027417 -
Vifa3g01816 201 Gene3D Myosin VI head, motor domain, U50 subdomain 9 139 - -
Vifa3g01816 201 Gene3D - 140 199 - -
Vifa3g01816 201 SMART MYSc_2a 1 201 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01816 201 FunFam Myosin 2 6 120 - -
Vifa3g01816 201 Pfam Myosin head (motor domain) 10 192 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01816 201 PRINTS Myosin heavy chain signature 176 201 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01816 201 PRINTS Myosin heavy chain signature 123 151 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01816 201 PANTHER MYOSIN 9 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01816 Vifa-Chr3 473731967 473733585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01816 10 192 Myosins gene family AT1G08730 87.432 4.93e-108 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01816 K10357 - gmx:100816792 336.265