Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01815 ATGGGGACTCCAGAGAATATTATTGTGGGTTCTCATGTCTGGATTGAAGACCCGGAGGTAGCTTGGATTGACGGGCAGGTATTAAAAATCAATGGAAAGGATGCTGAAATTGAAACTTCCGATGGAAAAAAGGCTGTTGCAAATTTATCAAAAATATTTCCCAAGGATATGGAAGCTCTTCCTGATGGAGTGGATGATATGACTAAACTGTCGTATTTGCATGAGCCTGGAGTCCTGCAGAACTTAAAGGCTAGATATGAATTGAATAAAATATATACTTATACAGGAAATGTTTTGATTGCAATAAATCCATTTCAAAAACTGCCTCATATTTATGGTGCACAAATGATGCAACAATACAAGGGAGTGCCACTTGGAGAATTAAGCCCTCATGTATTTGCAATTGCTGGTGTTGCATATAGGGCAATGGTTAATGAAGGGAAAAACAATTCCATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACGGAAACTACAAAACTGCTTATGCAATTCCTGGCTTTCTTAGGTGGTAGAGCTGTAACTGAAGGCAGAACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGCAATGCGAAAACTGTCAGGAATAACAATTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGACAAGAGCGGAAGAATCTCAGGAGCAGCCATCCGAACATACCTTCTAGAGAGATCTCGGGTCTGTCAAGTTAATGATCCTGAACGAAACTACCACTGCTTTTATCTTCTTTGTGCCGCACCACAGGAGGAAATTGAAAAATACAAATTAGGAAATCCGAAATTGTTTCACTACCTTAATCAGTCACAATGCTATGAACTGGCTGATGTAAATGATGCTCATGAGTATCTTGCCACCTGTAGAGCTATGGGCATTGTTGGAATAAGTCAAAAAGATCAGGTATTTCTTTCACAAGCACGAATTTAG 975 0.3949 MGTPENIIVGSHVWIEDPEVAWIDGQVLKINGKDAEIETSDGKKAVANLSKIFPKDMEALPDGVDDMTKLSYLHEPGVLQNLKARYELNKIYTYTGNVLIAINPFQKLPHIYGAQMMQQYKGVPLGELSPHVFAIAGVAYRAMVNEGKNNSILVSGESGAGKTETTKLLMQFLAFLGGRAVTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCAAPQEEIEKYKLGNPKLFHYLNQSQCYELADVNDAHEYLATCRAMGIVGISQKDQVFLSQARI 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01815 324 PANTHER MYOSIN 58 317 - -
Vifa3g01815 324 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa3g01815 324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 319 IPR027417 -
Vifa3g01815 324 Gene3D Kinesin motor domain 29 323 IPR036961 -
Vifa3g01815 324 Pfam Myosin head (motor domain) 64 316 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01815 324 FunFam Myosin heavy chain 252 307 - -
Vifa3g01815 324 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01815 324 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01815 324 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01815 324 ProSiteProfiles Myosin motor domain profile. 62 324 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01815 324 SMART MYSc_2a 56 323 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01815 324 Pfam Myosin N-terminal SH3-like domain 9 48 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01815 Vifa-Chr3 473721038 473724598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01815 1 316 Myosins gene family AT1G08730 83.861 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01815 K10357 - gmx:100816792 583.178