Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01813 ATGTCGACCACCGCTCAAACCAAGCCCAAGAAAACCACCGCCGCTGCAAAGAAGCCACTCTCTCATCCCACTTTCGCTGAGATGATAACTGAAGCCATCACGAGCCTGAAAGAAAGAACCGGTTCAAGCCAATACGCGATAACAAAATTCATCGAAGAGAAGCACAAAGACCTACCACCAACCTACCGCAAGCTTGTCCTCCTCCAACTCAAGAAATCCGTCGCTTCTGGAAATCTCTTCAAGGTGAAAAACTCCTTCAAAATCGCACCGTCTGTGGCCAAAACCGCTCCGGCCAAAACTGCTGCTAAAGCCACTGTGAAACCGAAAGCGAAAGCTGCCGTGAAGCCGAAAGCGAAAGCTGCTGTAAAACCTAAAGCGAAAGCTGTAGTGAAGCCGAAGGCGAAGAGTGTGAAGGCTACTCCGGTGAAGAAGGCGGTTGCTAAGAAGGTTGTGAAGAAGGTGAAGAGTGTTAAGAGTCCGGCGAAGAAGGTGAAGAGTGTTAAAACTCCGGTGAAGAAGGCGAAGAAGTGA 531 0.4953 MSTTAQTKPKKTTAAAKKPLSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKHKDLPPTYRKLVLLQLKKSVASGNLFKVKNSFKIAPSVAKTAPAKTAAKATVKPKAKAAVKPKAKAAVKPKAKAVVKPKAKSVKATPVKKAVAKKVVKKVKSVKSPAKKVKSVKTPVKKAKK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01813 176 PRINTS Histone H5 signature 35 52 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01813 176 PRINTS Histone H5 signature 143 160 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01813 176 PRINTS Histone H5 signature 8 29 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01813 176 PRINTS Histone H5 signature 111 125 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01813 176 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 21 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01813 176 MobiDBLite consensus disorder prediction 1 20 - -
Vifa3g01813 176 MobiDBLite consensus disorder prediction 157 176 - -
Vifa3g01813 176 SUPERFAMILY "Winged helix" DNA-binding domain 18 100 IPR036390 -
Vifa3g01813 176 PANTHER HISTONE H1 5 170 - -
Vifa3g01813 176 Gene3D - 17 96 IPR036388 -
Vifa3g01813 176 SMART h15plus2 19 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01813 176 CDD H15 21 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01813 176 Pfam linker histone H1 and H5 family 22 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01813 Vifa-Chr3 473225790 473226417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01813 23 88 Single Myb Histone (SMH) Gene Family AT1G72740 33.333 5.49e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01813 K11275 - gmx:100810590 127.102