Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01804 ATGACTACTGATCCAAGGGCTGCTAAGAGCTATGATGCTATGAATGACTCAAGGGCTATTAAGGCCTATGATGCCATGAAGAACTTGGGAATCTCTAAGGAAGAGGTGAAACCTGTGCTGAGAAATTTGCTTAAAGTGTACGATAAAAACTGGGAGCTTATTGAAGATGACAACTATAGGACCCTTATAGATGCGTACTTTGAGCCAATGGAAGAAAAGCCAGAAGAACACAAGAGAAAAGCTCCTGTAGAAGATAATGACAAACCTCCCAAGACTCAACAGAAATGTATAAAACCATTTCAAACTTCATCGTCACACAAACTTCTATCACAGAGAAGATTGAGTGACGATGAAAGGATGTCAAGCTTACCTTCCATGGCTGCTAGAGGTAAAAAAAGTTACTCTGCGGCAGCTTCATCTGCAGGGCTATATTCAAAGGAACCTAGCCATCAAAGGAAAAATATGTCAAGTGATCACCATCAGAAGAAGATTACAACACACAATGGCTCACTTGGCGCTTCAAATGGAAATCTTTCTATCAAATCCCTATCAAAGGGGTCAAGGCAAGCTCTTGCTGAAGATAAAAAGAAGTCAGTTAGATATGTCGATGACATAACAAAAGGTTCTGAAAATGTCAAAGTATCATTATTAGATGAAACTGAAAGTGAGGATTTTCCGAAGTTTAACTACATTCCGGGTAATGTGATTTATCAGTGTGCTAATGTCAACATTTCACTGGCTCGGATTGCGGATGAGGGTTGCTGTGCTGATTGTTCAGGCGACTGTCTTTCCTTATCATTTCCTTGTGCTTGCTCTCAAGAAACTGGTGGAGAGTTTGCTTACTCTTCAAACGGTTTATTAAAAGAAAAATTTCTCACAGATTGCATAAATGAACCCCAAGCTCATCATTATGTGTATTGTAAAGAATGCCCAATTGAGAGGTCTAAGAACGAGAGCAAACCTGAACCATGCAGGGGACATCTGGTTAGGAAGTTTATAAAGGAGTGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAAATCGGGTAGTACAACGAGGTTTAAGCCGGAAATTGCAGGTTTTCTTGACTGATCAGGGAAAGGGCTGGGGCGTTAGAAGCTTAGAAGATTTACCCATGGGAAGCTTTGTATGTGAATATGCCGGAGAAATTTTAACCAACACAGAGTTATATGATAGGATTGTCCTGAGTACCAGCAATGACAGACATACATATCCTGTAACGCTTGATGCGGATTGGGGCTCAGAAGTGGGTCTAAAGGATGAGGAGGCATTATGCTTGGATGCAACACATAATGGGAATGTTGCAAGATTCATCAATCACAGATGTAATGATGCAAATCTGATAGATATTCCAGTTGAAGTAGAGACACCTGATCGCCACTATTATCATCTAGCCCTCTTTACAAAAAGAAATGTGAGTGCATACGAGGAGTTGACATGGGATTATGGAATTGACTTTGATGATCATACCCATCCTATTAAAGCATTTAAATGCTGTTGTGGAAGCGCTCACTGCCGAGATAAGAAACAAAAAGGAACTAAATCAGCAAAGACTAAAAAACTCAAGCATACGAATGCACACTGA 1608 0.4049 MTTDPRAAKSYDAMNDSRAIKAYDAMKNLGISKEEVKPVLRNLLKVYDKNWELIEDDNYRTLIDAYFEPMEEKPEEHKRKAPVEDNDKPPKTQQKCIKPFQTSSSHKLLSQRRLSDDERMSSLPSMAARGKKSYSAAASSAGLYSKEPSHQRKNMSSDHHQKKITTHNGSLGASNGNLSIKSLSKGSRQALAEDKKKSVRYVDDITKGSENVKVSLLDETESEDFPKFNYIPGNVIYQCANVNISLARIADEGCCADCSGDCLSLSFPCACSQETGGEFAYSSNGLLKEKFLTDCINEPQAHHYVYCKECPIERSKNESKPEPCRGHLVRKFIKECWRKCGCDMQCGNRVVQRGLSRKLQVFLTDQGKGWGVRSLEDLPMGSFVCEYAGEILTNTELYDRIVLSTSNDRHTYPVTLDADWGSEVGLKDEEALCLDATHNGNVARFINHRCNDANLIDIPVEVETPDRHYYHLALFTKRNVSAYEELTWDYGIDFDDHTHPIKAFKCCCGSAHCRDKKQKGTKSAKTKKLKHTNAH 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01804 535 CDD SET_SETDB-like 226 491 - -
Vifa3g01804 535 SUPERFAMILY SET domain 212 514 IPR046341 -
Vifa3g01804 535 Pfam SET domain 369 491 IPR001214 GO:0005515
Vifa3g01804 535 FunFam SET-domain containing protein lysine methyltransferase family protein 205 516 - -
Vifa3g01804 535 Pfam Ubiquitin-binding WIYLD domain 15 71 IPR018848 -
Vifa3g01804 535 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 17 524 - -
Vifa3g01804 535 Pfam Pre-SET motif 205 349 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa3g01804 535 SMART set_7 357 497 IPR001214 GO:0005515
Vifa3g01804 535 Gene3D SET domain 204 516 IPR046341 -
Vifa3g01804 535 Gene3D - 2 72 IPR043017 -
Vifa3g01804 535 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 529 IPR025776 -
Vifa3g01804 535 MobiDBLite consensus disorder prediction 71 179 - -
Vifa3g01804 535 ProSiteProfiles Pre-SET domain profile. 254 354 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa3g01804 535 MobiDBLite consensus disorder prediction 71 92 - -
Vifa3g01804 535 SMART preset_2 202 341 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa3g01804 535 ProSiteProfiles SET domain profile. 357 491 IPR001214 GO:0005515
Vifa3g01804 535 MobiDBLite consensus disorder prediction 95 109 - -
Vifa3g01804 535 MobiDBLite consensus disorder prediction 151 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01804 Vifa-Chr3 470889248 470900948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01804 142 514 Su(var)3-9 homologs AT5G04940 27.778 1.53e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa3g01804 Pre-SET 6.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01804 - - psat:127094085 952.97