Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01803 ATGTCTTCATCTTACCCCTCGTCCTCGATGCGAGCTACATCAATTAATTCCAACAACAGAACTGCCGGACACATGTTTTCAAACCCTGCTGAGCTCCTTGATAACGTCTCTTTTTCTCCTGCTTCAGAAATGCATTCTATGCCATTCCCGCAAGATATGCCTATCCCGCAAGATATGCCTATCCTGCAAGAAACCTGGGGAACGGATCTGTTTGATCCGTTTCCTGATAATGTTACAATCCAGAACGATCATGTGGGATACAGTGGTTCTGATGTCTTGGGTGGAAATGCTAAGACAACTGAGTTCAAGGAGTGGGTTGATCAGTTAATGTCGGTTGATGATGATTCTCTTACTCCTAATTGGAATGAACTTCTCGGTGATGATAATATGGCAGAACCATTAGCAAAGGAGGCTCAAGTTTCACTACAGCAGTATGTACCATCTAATGAAGCTTCACTGCAGGAGAATCAAGTTTTACTGCAGGAGAATCAAGTTTCACTGCAGCAGTATCTTCCTAATTCTTCTGGATCGACTACTTCACAATCTAAGCCTAGAATGCGTTGGACTCCTGAACTTCACGAGGCCTTCGTGGACGCAGTCAATCAGCTTGGTGGTAGTGAGAAGGCTACACCTAAGGGTGTCTTGAACCTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCACCTGCAGAAATATAGAACTGCCAGATACAAACCTGAAGCATCAGAAGGAATTCCAGAGAAGTTGACTTCAATCGAAGAAATGCCGCCTATAGACTTAAAAACGCCTAAGGGCATTACCGAAGCATTGCGGTTACAGATGGAACTCCAAAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAATCTACAGATTCAAATTGAGAACCAAGGGAAGCATCTACAGATGATGTTTGAGCAACAGCTCAAGTCGGGCGAGCCTTCTGCTCCGTCATCTAGTGCCGCAGTACCTTCTCCAGTTGAAAATGTTGAAAACTCAAATGAGGGTCATGAAAAGATTGGAATCAACTGTATCACTCCAAACACAAGCGCGGAGCAAAAGGCAGATGATGCTAAAGTTACTGATGAACTTGACCAGTTATCCGCACCACCCTCAAAACGAGTGAAGACTGACTAG 1146 0.4415 MSSSYPSSSMRATSINSNNRTAGHMFSNPAELLDNVSFSPASEMHSMPFPQDMPIPQDMPILQETWGTDLFDPFPDNVTIQNDHVGYSGSDVLGGNAKTTEFKEWVDQLMSVDDDSLTPNWNELLGDDNMAEPLAKEAQVSLQQYVPSNEASLQENQVLLQENQVSLQQYLPNSSGSTTSQSKPRMRWTPELHEAFVDAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPEASEGIPEKLTSIEEMPPIDLKTPKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKHLQMMFEQQLKSGEPSAPSSSAAVPSPVENVENSNEGHEKIGINCITPNTSAEQKADDAKVTDELDQLSAPPSKRVKTD 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01803 381 Coils Coil 270 290 - -
Vifa3g01803 381 FunFam Myb family transcription factor 182 240 - -
Vifa3g01803 381 Pfam Myb-like DNA-binding domain 185 236 IPR001005 -
Vifa3g01803 381 SUPERFAMILY Homeodomain-like 181 237 IPR009057 -
Vifa3g01803 381 Pfam MYB-CC type transfactor, LHEQLE motif 269 313 IPR025756 -
Vifa3g01803 381 NCBIfam myb-like DNA-binding domain, SHAQKYF class 183 237 IPR006447 GO:0003677
Vifa3g01803 381 MobiDBLite consensus disorder prediction 311 381 - -
Vifa3g01803 381 MobiDBLite consensus disorder prediction 1 23 - -
Vifa3g01803 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 163 330 IPR044848 GO:0003700
Vifa3g01803 381 MobiDBLite consensus disorder prediction 311 334 - -
Vifa3g01803 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 180 240 IPR017930 -
Vifa3g01803 381 Gene3D - 182 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01803 Vifa-Chr3 470846369 470848808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01803 76 324 G2-like Transcription Factor Family AT4G28610 51.181 9.61e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa3g01803 Myb_DNA-binding 2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01803 - - psat:127093006 594.734