Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01802 ATGTCTTCATCTTACCCCTCGTCCTCGATGCGAGCTACATCAATTAATTCCAACAACAGAACTGCCGGACACATGTTTTCAAACCCTGCTGAGCTCCTTGATAACGTCTCTTTTTCTCCTGCTTCAGAAATGCATTCTATGCCATTCCCGCAAGATATGCCTATCCCGCAAGATATGCCTATCCTGCAAGAAACCTGGGGAACGGATCTGTTTGATCCGTTTCCTGATAATGTTACAATCCAGAACGATCATGTGGGATACAGTGGTTCTGATGTCTTGGGTGGAAATGCTAAGACAACTGAGTTCAAGGAGTGGGTTGATCAGTTAATGTCGGTTGATGATGATTCTCTTACTCCTAATTGGAATGAACTTCTCGGTGATGATAATATGGCAGAACCATTAGCAAAGGAGGCTCAAGTTTCACTGCAGGAGGCTCAAGTTTCACTACAGCAGTATGTACCATCTAATGAAGCTTCACTGCAGGAGAATCAAGTTTTACTGCAGGAGAATCAAGTTTCACTGCAGCAGTATCTTCCTAATTCTTCTGGATCGACTACTTCACAATCTAAGCCTAGAATGCGTTGGACTCCTGAACTTCACGAGGCCTTCGTGGACGCAGTCAATCAGCTTGGTGGTAGTGAGAAGGCTACACCTAAGGGTGTCTTGAACCTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCACCTGCAGAAATATAGAACTGCCAGATACAAACCTGAAGCATCAGAAGGAATTCCAGAGAAGTTGACTTCAATCGAAGAAATGCCGCCTATAGACTTAAAAACGCCTAAGGGCATTACCGAAGCATTGCGGTTACAGATGGAACTCCAAAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAATCTACAGATTCAAATTGAGAACCAAGGGAAGCATCTACAGATGATGTTTGAGCAACAGCTCAAGTCGGGCGAGCCTTCTGCTCCGTCATCTAGTGCCGCAGTACCTTCTCCAGTTGAAAATGTTGAAAACTCAAATGAGGGTCATGAAAAGATTGGAATCAACTGTATCACTCCAAACACAAGCGCGGAGCAAAAGGCAGATGATGCTAAAGTTACTGATGAACTTGACCAGTTATCCGCACCACCCTCAAAACGAGTGAAGACTGACTAG 1167 0.443 MSSSYPSSSMRATSINSNNRTAGHMFSNPAELLDNVSFSPASEMHSMPFPQDMPIPQDMPILQETWGTDLFDPFPDNVTIQNDHVGYSGSDVLGGNAKTTEFKEWVDQLMSVDDDSLTPNWNELLGDDNMAEPLAKEAQVSLQEAQVSLQQYVPSNEASLQENQVLLQENQVSLQQYLPNSSGSTTSQSKPRMRWTPELHEAFVDAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPEASEGIPEKLTSIEEMPPIDLKTPKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKHLQMMFEQQLKSGEPSAPSSSAAVPSPVENVENSNEGHEKIGINCITPNTSAEQKADDAKVTDELDQLSAPPSKRVKTD 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01802 388 MobiDBLite consensus disorder prediction 318 388 - -
Vifa3g01802 388 SUPERFAMILY Homeodomain-like 188 244 IPR009057 -
Vifa3g01802 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 187 247 IPR017930 -
Vifa3g01802 388 MobiDBLite consensus disorder prediction 318 341 - -
Vifa3g01802 388 Gene3D - 189 248 - -
Vifa3g01802 388 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 170 337 IPR044848 GO:0003700
Vifa3g01802 388 NCBIfam myb-like DNA-binding domain, SHAQKYF class 190 244 IPR006447 GO:0003677
Vifa3g01802 388 Coils Coil 277 297 - -
Vifa3g01802 388 FunFam Myb family transcription factor 189 247 - -
Vifa3g01802 388 Pfam MYB-CC type transfactor, LHEQLE motif 276 320 IPR025756 -
Vifa3g01802 388 MobiDBLite consensus disorder prediction 1 23 - -
Vifa3g01802 388 Pfam Myb-like DNA-binding domain 192 243 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01802 Vifa-Chr3 470846369 470848808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01802 43 336 G2-like Transcription Factor Family AT3G04450 46.302 9.94e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa3g01802 Myb_DNA-binding 2.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01802 - - psat:127093006 607.831