Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01789 ATGTTGAGCATAAAGCTGAGACGAAAAAGAAAGCTGTTCCTCGGAAAGCTGCTGGACAAGCTTGGGAGGATCCTATACTTGCAGAGTGGCCTGAAGATGACTATCGACTCTTCTGCGGTGATCTTGGTAATGAAGTCAATGATGATGTTCTTTCGAAGGCATTCACACGATTCCCTTCCTTTTAACATGGCAAGGGTTGTTAGAGATAAGCGAACTGGAAAAACAAAGGGTTATGGATTTATAAGCTTTGCTAACCCTGCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTCGGAAACCGGCCAATAAAACTACGTAAGAGTAAGTGGAGAGAGAGAACTGATTATGATGCACTGGAGAAACAGAAGAACCATATTCAGAAGAAACCAAAAATGTCAAGGAAGAGTATCCTCCACAAGTGA 432 0.419 MLSIKLRRKRKLFLGKLLDKLGRILYLQSGLKMTIDSSAVILVMKSMMMFFRRHSHDSLPFNMARVVRDKRTGKTKGYGFISFANPADLAAALKEMNGKYVGNRPIKLRKSKWRERTDYDALEKQKNHIQKKPKMSRKSILHK 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01789 143 MobiDBLite consensus disorder prediction 124 143 - -
Vifa3g01789 143 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 107 IPR000504 GO:0003723
Vifa3g01789 143 SUPERFAMILY RNA-binding domain, RBD 64 116 IPR035979 GO:0003676
Vifa3g01789 143 SMART rrm1_1 41 109 IPR000504 GO:0003723
Vifa3g01789 143 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 113 IPR000504 GO:0003723
Vifa3g01789 143 Gene3D - 31 140 IPR012677 -
Vifa3g01789 143 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01789 Vifa-Chr3 466783960 466787412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01789 73 125 Eukaryotic Initiation Factors Gene Family AT1G22760 40.000 9.30e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01789 K25079 - gmx:100791946 163.696