Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01771 ATGGCGAACCGGTGGTGGACTGGACCGGTGGGTTTAGGCGGTATGGATAACTCGGTGAACTCATCACCACTAGTACCAAAACCGGATCTGGGTTTTTCCATGAACGAAAGTGCAGTAACAGGAGTGAACAACATCAACAATAATGAAGAAGATGAGAGAGAAAACAGTGATGAACAAAAAGGAGGAGGTATAGAAACAAACAACTCCACGCGCCGTCCACGAGGGCGTCCTTCAGGGTCGAAAAACAAGCCGAAGCCGCCGATATTCATAACAAGAGACAGCCCTAACGCGCTGCGAAGCCATGTTATGGAAGTGGCATCAGGAACTGATATAGCTGATAGTGTTGTTCAGTTCGCTAGAAAACGACAGAGAGGTATTTGCATTCTAAGCGCAAGTGGAACGGTTGTTAATGTTTCTCTCCGGCAGCCTACAGGTCCTGGAGCTGTGGTGGCGCTTCCGGGGAGATTTGATATTCTCTCGTTGACTGGTTCGGTGCTTCCTGGACCTTCACCGCCCGGTGCTACTGGTTTGACTATTTATCTTTCTGGGGGGCAGGGACAGGTGGTGGGTGGTGGAGTGGTTGGACCGCTTGTGGCGGCAGGGCCGGTTATGTTGATGGCTGCGACTTTCTCGAATGCAACTTATGAGAGGTTGCCTGTGGAGGATGGTGATGATCAGGAAGGGCAGCAGGGTGGTGGTGATGAGTCTCCCCCGCCTGGGATGGGACAGTTGGCAGGTGGATCAGTCGGAGAAGGTTCGTCGTCGATTCCAGTTTATAATAATGTTGGTGGAAATTTGGGTGTTTCAAATGGGCAACAGATGTTGAATAATCATGAAGCTTATAATTCTCCTTGGGGTCATGGTGGTAGACCACCTTACTAA 882 0.5023 MANRWWTGPVGLGGMDNSVNSSPLVPKPDLGFSMNESAVTGVNNINNNEEDERENSDEQKGGGIETNNSTRRPRGRPSGSKNKPKPPIFITRDSPNALRSHVMEVASGTDIADSVVQFARKRQRGICILSASGTVVNVSLRQPTGPGAVVALPGRFDILSLTGSVLPGPSPPGATGLTIYLSGGQGQVVGGGVVGPLVAAGPVMLMAATFSNATYERLPVEDGDDQEGQQGGGDESPPPGMGQLAGGSVGEGSSSIPVYNNVGGNLGVSNGQQMLNNHEAYNSPWGHGGRPPY 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01771 293 CDD DUF296 99 182 IPR005175 -
Vifa3g01771 293 PIRSF ESCAROLA 18 293 IPR014476 GO:0003680
Vifa3g01771 293 ProSiteProfiles PPC domain profile profile. 95 230 IPR005175 -
Vifa3g01771 293 MobiDBLite consensus disorder prediction 1 95 - -
Vifa3g01771 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 222 - -
Vifa3g01771 293 MobiDBLite consensus disorder prediction 61 75 - -
Vifa3g01771 293 MobiDBLite consensus disorder prediction 220 256 - -
Vifa3g01771 293 Gene3D - 98 226 - -
Vifa3g01771 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Vifa3g01771 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 46 287 IPR014476 GO:0003680
Vifa3g01771 293 FunFam AT-hook motif nuclear-localized protein 98 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01771 Vifa-Chr3 464402655 464403536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01771 1 293 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 51.935 2.49e-81 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01771 - - aprc:113873404 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01771 3 464402655 464403536 Vifa3g01771 3 464402655 464403536 ECH