Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01768 ATGAAATTGAAAGCTCTTATTCTATTGTTATTGCTTTTCAATCTTACTTTTTATGCTTCTGCTACTGATTCTGAGTATGATCACTGTAACTGTGATGATGAAGAAGCGCTTTTCAGTATCCACGCAATACTTGTTGGTCAAAAAGTCAGTGATTTTTTAATTGCAATTGCTTATTTTTCAATCCCAATTGAAATTTTTTACTTTGTTAGTCAATCAAATGTTCCTTTCAAGCTACTGTTTCTTCAATTCATAGCCTTTATAGTTCTATGTGGTATAACTCATTTGCTCAATGCTTTTTCTTATCATGGTCCTCCTTCTTTTCGTTTGTTGCTTTCCTTTACTGTTGCTAAATTTCTCACTGCTCTTGTGTCGTGTGCAACGGCGTTGACGCTTCCGCCTTTAATCCCTCTCCTTCTTAAGGTTAAGATTAGGGAGCTTTTTCTGAGGCAGAATGTGATGGAGTTGGGACAAGAGGTTGGGATTATGAAGAAACAAAAGGAAGCTAGTTTGCATGTTAGGATGCTTACTAGGGAGATTAGGAAGTCTCTTGATAAACATACTATTTTGTATACTACTCTTGTTGAGCTTTCGAAGGCTTTCGATTTGCATAATTGTGCTGTTTGGATGCCGAATAATGATAGACGAGAGATGTATTTGACTCATGAGTTGAAATCGGATTCTGGTAAGAGTTTTCATCATAATTCTATTCCTGCAAATGACCCTGATGTGTTGGAGATAAGGAAAGCTAAAGGGGTTAGGATTTTGAGGCCGGAATCTAAGCTAGGAGCTGCAAGTAGTGGCGGTGGTGGTATTGAGGAGTTGGGTGCTGTCGCGGCTGTTCGTATGCCGATGCTTAATGTCTCAAATTTCAAAGGTGGGACGCCGGAGTTGGTTGATACGTGTTATGCGATACTGGTTTTGGTTCTTCCGAGTTCAAACGGTAGGGTTTGGACGGGTCCGGAGATGGATATAGTTGAGGTAGTTGCTGATCAGGTGGCTGTAGCACTTTCTCATGCGTCGGTTCTCGAAGAGTCTCACTTAATGAGACAGAAACTTGAAGAGCAAAACCGAGCGTTGCAACAGTCTCAAAAGAATGCTATGATGGCTAGCCAGGCTAGGAAGTCATTCCAGACAGTGATGAGCCATGGAATGAGGAGGCCCATGCATTCGGTTGTTGGGATGCTTTCGTTGTTTCAAGAAGGTAATATGAAGCCTGAACAGAAGATTATCGGTGACACAATGTTGAAAGTCGGCAAAGTACTCTCGAGTTTAGTAAACGATGTAATGGATATTTCCGAAAATAAAAAGGGTGGCATCCAGTTAGAGATGAAACCTTTCTTTCTACATTCGATGTTAAGGGAAGCTGCTTGCATTGCCAAGTGCTTGTGTGTGTATCAAGGCTTTGGTTTTCTAATTGAAGTCCAAAAGTCTTTGCCTGAGAAAATTTTAGGCGATGAAGCAAGGACTTTTCAAGTGATCATGCATATTATTGGATATTTATTGAACACATGTGACCGGGGGAATCTTTTTTTTCGGGTTTATCTTGAAAGTGACGGTGGCGATAAGGATGACAAAAAATTTGGTGTATGGAGATCAGGCAGCCCAGTTGAGTACGTACATATAAAATTTGATTTTCAGATTAATGGTAGTTCTCAGTCTAGTGGATCGATTTCGACAAAACAACAAGTTGGTAGGAGGCTGAATCACAACGGAGAATCTAAGGAGAGTCTAAGCTTCAACATGTGCAGGAAGTTGGTACAGATAATGCAAGGAAATATATTGATATTACCCGACTCACAGGGTTTGGCGCAAGGCGTGTCACTTGTTCTAAAGTTTCAGACAGGACCATCACTCGAAAGATATGTGATTGAACCTAAAGATTATTCAAATTCACAGTTTGGAGGCCTCAAGATTTTGTTGGCAGATGAAGATGGTTTAAACAGGATCGTGACGAAGAAGCTACTCGAGAAGCTCGGCTGTCAAGTAACTGCAGTTTCGTCAGGATTTGAGTGCGTGAGTGTTATAACTGGCTCTGGTGGTAACGTATTCAAAATTATTATGTTGGATATTCACATGCCTGAAATGGACGGTTTTGAAGTCGCGACTAGGATCAGGAAGTTCAATGGCCCTAAATGGCCTTTGATCATAGCTCTAATAGCAAATGCGGAAGAGCAAATGAAGGATAGATGCATGCTGGCTGGAATGAATGGAGTGATTCGGAAACCAATTCTACTTCACCAGATAGCAGACGAACTTAGAACGGTCCTGCATCGTGCAGGTGAAAAGCTGTGA 2292 0.4101 MKLKALILLLLLFNLTFYASATDSEYDHCNCDDEEALFSIHAILVGQKVSDFLIAIAYFSIPIEIFYFVSQSNVPFKLLFLQFIAFIVLCGITHLLNAFSYHGPPSFRLLLSFTVAKFLTALVSCATALTLPPLIPLLLKVKIRELFLRQNVMELGQEVGIMKKQKEASLHVRMLTREIRKSLDKHTILYTTLVELSKAFDLHNCAVWMPNNDRREMYLTHELKSDSGKSFHHNSIPANDPDVLEIRKAKGVRILRPESKLGAASSGGGGIEELGAVAAVRMPMLNVSNFKGGTPELVDTCYAILVLVLPSSNGRVWTGPEMDIVEVVADQVAVALSHASVLEESHLMRQKLEEQNRALQQSQKNAMMASQARKSFQTVMSHGMRRPMHSVVGMLSLFQEGNMKPEQKIIGDTMLKVGKVLSSLVNDVMDISENKKGGIQLEMKPFFLHSMLREAACIAKCLCVYQGFGFLIEVQKSLPEKILGDEARTFQVIMHIIGYLLNTCDRGNLFFRVYLESDGGDKDDKKFGVWRSGSPVEYVHIKFDFQINGSSQSSGSISTKQQVGRRLNHNGESKESLSFNMCRKLVQIMQGNILILPDSQGLAQGVSLVLKFQTGPSLERYVIEPKDYSNSQFGGLKILLADEDGLNRIVTKKLLEKLGCQVTAVSSGFECVSVITGSGGNVFKIIMLDIHMPEMDGFEVATRIRKFNGPKWPLIIALIANAEEQMKDRCMLAGMNGVIRKPILLHQIADELRTVLHRAGEKL 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01768 763 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Vifa3g01768 763 FunFam Ethylene receptor 4 339 433 - -
Vifa3g01768 763 PIRSF Ethylen_sen_hybr_HK 2 763 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vifa3g01768 763 SUPERFAMILY GAF domain-like 187 339 - -
Vifa3g01768 763 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Vifa3g01768 763 Coils Coil 342 372 - -
Vifa3g01768 763 Gene3D - 337 434 - -
Vifa3g01768 763 SMART gaf_1 184 346 IPR003018 GO:0005515
Vifa3g01768 763 SUPERFAMILY CheY-like 633 758 IPR011006 -
Vifa3g01768 763 CDD REC_ETR-like 636 752 - -
Vifa3g01768 763 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 760 - -
Vifa3g01768 763 Pfam Response regulator receiver domain 638 750 IPR001789 GO:0000160
Vifa3g01768 763 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 357 436 IPR036097 GO:0000155|GO:0007165
Vifa3g01768 763 SMART REC_2 636 752 IPR001789 GO:0000160
Vifa3g01768 763 Gene3D - 636 762 - -
Vifa3g01768 763 Gene3D - 168 336 IPR029016 -
Vifa3g01768 763 ProSiteProfiles Response regulatory domain profile. 637 756 IPR001789 GO:0000160
Vifa3g01768 763 Pfam GAF domain 186 336 IPR003018 GO:0005515
Vifa3g01768 763 CDD HATPase_ETR2_ERS2-EIN4-like 478 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01768 Vifa-Chr3 464137768 464140973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01768 23 761 Miscellaneous Gene Families AT3G04580 58.400 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa3g01768 GAF 2.2e-09 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01768 K14509 - gmx:100101892 1121.3