Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01767 ATGAAACTTTTTCTTTTCTTTCTCATCACATTCTCTTTCTTTTTCCAAACACAGTTACCACTAGTTTCTTCTGCTACAACTCTTCCCTTTCAACTCATCACTCTCCTCTCAATAAAATCAGCCCTCATTGACCCTCTCAATCATCTCAGTGACTGGAAAATCAACCCTTCTAATTCTTCCTCTACTTTCTCAAACTCCAATAACTCCCAAAACCCAATTTGGTGTTTTTGGAGAGGCATCACTTGTCACCCAAAAACAGCACAAATCACTTCACTAAACCTTTCTCACCTCAATCTTTCAGGCACAATCTCACCTCAAATCCGCTACTTAACCACCTTAACCCACTTGAACATAAGTGGAAATGATTTCAATGGAACTTTTCAAACAGCAATTTTCCAACTCACTGAGCTTAGAACACTAGACATTAGCCATAACTCCTTCAACTCAACTTTCCCACCTGGAATATCAAAGTTAAGATTCTTAAGAATCTTCAATGCTTACAGCAACAACTTCACAGGCCCTCTTCCTGAAGAACTAATCAGGCTTCCATTTCTAGAACAACTTAACCTTGGTGGAAGCTATTTCAGTGGCAGAATCCCACCAAGCTATGGAACTTTCAAAAGACTCAAATTCCTATTATTTCATGGTAATGAATTGGAAGGTTCACTACCACCTGAATTAGGCTTATTATCAGAGCTACAACACTTGGAAATTGGATACAACCCATTCTCAGGAACAATACCAGTGGAATTAACAATGTTGTCTAATCTCAAATACTTAGACATCTCATTCACAAACATCTCAGGTCAAGTGATTCCTGGACTAGGAAACTTAACCATGCTTGAAAATTTGTTTCTCTTTGGAAATCGGTTAAGCGGAGAAATCCCATCAAGCATAGGCAAGTTGAAATCGCTAAAAGATCTTGATTTATCAGACAATGAACTCACAGGTTCAATTCCACCAGAAATAACAATGTTGAAGGAACTAACAAGGATGAATCTTATGATTAACAAGCTAAAAGGTGAAATTCCACAAGGAATTGGCGAGCTGCCAAATCTCAACAGGTTCTATGTTTTCAACAACTCGCTCAATGGTACACTGCCACCAAAACTCGGCTCCAACGGGCTACTACAATTACTAGATGTTTCCACAAACTCACTTCAAGGTCCAATCCCTATGAACATTTGCAAGGGAAACAATCTTGTTAAGTTCAATCTCTTTGACAACAAATTCACCAATATTCTTCCATTATCACTCACTAAATGCACCTCACTTGCTCGGGTTCGGATACAAAACAACAAACTCACAGGTTCAATTCCACAAACACTTACAATGCTTCCTAATTTGACATACCTTGATTTGAGCAACAACAATTTCTACGGGGAAATTCCTAAAGAATTAGGCAATCTCCAATACCTAAACATCACAGGAAACTCGTTTGAAAGCAATTTACCTAGCAACATTTGGAACGCAAGTAATCTACAGATTTTCTCAGCTTCGAGTTCAAAAATCACTGGTCAAATTCCCGAATTCGTTGGATGCGACTCGATTTACAAGATCGAATTGCAAGGGAATTTAATCAACGGTAGCATTCCTTGGAATATCGGTCACTGCGAGAAACTGATTATGTTGAACCTAAGTAGAAACAATCTCACCGGAATCATACCTTGGGAAATCTCAACTCTTCCTTCAATCACCGACGTTGATCTCTCACAAAACTCACTCACCGGAACAATACCTTCAAGCTTCAACAATTGCTCCACTCTCCAGAATTTCAACGTCAGCTTCAACTTCCTCACCGGTCCAATTCCTTCCTCAGGCATCTTCCAAAGTCTCCATCCTTCTTCCTACTCTGGCAACAAAAACCTCTGCGGTGATCTTCTAGCCAAACCATGTGCCTCCGCCGGAGAAAACGAACTAGAGGTCTACCACCAGGAACCGAAGAAAACCGCGGGCGCAATCATTTGGATAATCGCGGCAGCGTTCGGGATCGGACTCTTCGTTATCGTCGCCGGAACACGTTGCTTCCACGCGAATTATAAGCGTGGTTTCAACGAGAGCAACGGCGAAATCGGACCGTGGAAGTTAACGGCGTTTCAGCGGTTAAATTTCACGGCGGATGATGTACTCGAGTGCGTTTCAATGTCAGATAAGATATTAGGAATGGGGTCCACAGGAACGGTTTATAAAGCGGAAATGCCAGGTGGAGAAATCATAGCCGTTAAAAAGCTTTGGGGAAAACAAAAGGAAAATAACAGTAATCTAATCCGACGGAGGAGAGGCGTTTTAGCTGAAGTGGATGTATTAGGAACCGTGAGACACAGGAATATTGTGAGATTGTTAGGCTGTTGCAGCAATCAGGAAATTACCATGTTGCTCTACGAGTACATGCCAAATGGTAACCTTGATGATTTGTTACATGGAGAGAATAAAGGGGACAATATGGTAATTTCGGATTGGTTAACTAGGTATAAGATAGCATTGGGTGTGGCTCAGGGGATATGTTATCTACACCATGATTGTGATCCTGTGATTGTGCATAGAGATCTTAAACCTAGTAACATTTTATTGGACGGTGAGATGGAAGCTAGAGTGGCTGATTTTGGTGTTGCTAAGTTGATTCAAGCTGATGAATCTATGTCTGTTATTGCTGGATCATATGGTTACATTGCTCCAGAGTATGCTTATACACTCCAAGTTGATGAGAAGAGTGATATATACAGTTATGGAGTGGTGTTGATGGAGATTTTAAGTGGAAAACGTTCTGTGGATCAAGAATTTGGTGATGGGAATAGTATTGTGGATTGGGTTAAGTCGAAAGTAAAGACGAAAGATGGAGTTGAAGGTATATTGGACAAGAATGCAGGGCCAGGGTGTGGTTCAGTGAAAGAAGAAATGATACAGATGCTTAGAATTGCATTGCTTTGTACAAGTAGAAATCCAGCTGATAGGCCTTCAATGAGAGATGTTGTGTTGATGCTTCAAGCTGCTAAACCTAAGAGGAAATTGCTTGGTGGAGGTGGTGATGTTGCTTTGATTCAAAAGCCAGTTACCAATGAAAGCTAG 3066 0.4077 MKLFLFFLITFSFFFQTQLPLVSSATTLPFQLITLLSIKSALIDPLNHLSDWKINPSNSSSTFSNSNNSQNPIWCFWRGITCHPKTAQITSLNLSHLNLSGTISPQIRYLTTLTHLNISGNDFNGTFQTAIFQLTELRTLDISHNSFNSTFPPGISKLRFLRIFNAYSNNFTGPLPEELIRLPFLEQLNLGGSYFSGRIPPSYGTFKRLKFLLFHGNELEGSLPPELGLLSELQHLEIGYNPFSGTIPVELTMLSNLKYLDISFTNISGQVIPGLGNLTMLENLFLFGNRLSGEIPSSIGKLKSLKDLDLSDNELTGSIPPEITMLKELTRMNLMINKLKGEIPQGIGELPNLNRFYVFNNSLNGTLPPKLGSNGLLQLLDVSTNSLQGPIPMNICKGNNLVKFNLFDNKFTNILPLSLTKCTSLARVRIQNNKLTGSIPQTLTMLPNLTYLDLSNNNFYGEIPKELGNLQYLNITGNSFESNLPSNIWNASNLQIFSASSSKITGQIPEFVGCDSIYKIELQGNLINGSIPWNIGHCEKLIMLNLSRNNLTGIIPWEISTLPSITDVDLSQNSLTGTIPSSFNNCSTLQNFNVSFNFLTGPIPSSGIFQSLHPSSYSGNKNLCGDLLAKPCASAGENELEVYHQEPKKTAGAIIWIIAAAFGIGLFVIVAGTRCFHANYKRGFNESNGEIGPWKLTAFQRLNFTADDVLECVSMSDKILGMGSTGTVYKAEMPGGEIIAVKKLWGKQKENNSNLIRRRRGVLAEVDVLGTVRHRNIVRLLGCCSNQEITMLLYEYMPNGNLDDLLHGENKGDNMVISDWLTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQADESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLMEILSGKRSVDQEFGDGNSIVDWVKSKVKTKDGVEGILDKNAGPGCGSVKEEMIQMLRIALLCTSRNPADRPSMRDVVLMLQAAKPKRKLLGGGGDVALIQKPVTNES 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01767 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Vifa3g01767 1021 ProSiteProfiles Leucine-rich repeat profile. 304 326 IPR001611 GO:0005515
Vifa3g01767 1021 Gene3D Transferase(Phosphotransferase) domain 1 797 1004 - -
Vifa3g01767 1021 FunFam leucine-rich repeat receptor-like protein kinase TDR 797 1005 - -
Vifa3g01767 1021 ProSitePatterns Protein kinases ATP-binding region signature. 720 743 IPR017441 GO:0005524
Vifa3g01767 1021 SUPERFAMILY RNI-like 91 412 - -
Vifa3g01767 1021 Pfam Leucine Rich Repeat 448 470 IPR001611 GO:0005515
Vifa3g01767 1021 ProSiteProfiles Protein kinase domain profile. 714 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01767 1021 SUPERFAMILY Protein kinase-like (PK-like) 717 994 IPR011009 -
Vifa3g01767 1021 PRINTS Leucine-rich repeat signature 305 318 - -
Vifa3g01767 1021 PRINTS Leucine-rich repeat signature 446 459 - -
Vifa3g01767 1021 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 266 996 - -
Vifa3g01767 1021 SMART serkin_6 714 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01767 1021 Gene3D Ribonuclease Inhibitor 164 269 IPR032675 -
Vifa3g01767 1021 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 683 796 - -
Vifa3g01767 1021 Gene3D Phosphorylase Kinase; domain 1 695 796 - -
Vifa3g01767 1021 Gene3D Ribonuclease Inhibitor 270 328 IPR032675 -
Vifa3g01767 1021 Gene3D Ribonuclease Inhibitor 32 160 IPR032675 -
Vifa3g01767 1021 SUPERFAMILY L domain-like 319 624 - -
Vifa3g01767 1021 FunFam Leucine-rich repeat receptor-like protein kinase TDR 326 634 - -
Vifa3g01767 1021 Pfam Protein kinase domain 717 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01767 1021 Pfam Leucine rich repeat 517 575 IPR001611 GO:0005515
Vifa3g01767 1021 Gene3D Ribonuclease Inhibitor 337 640 IPR032675 -
Vifa3g01767 1021 SMART LRR_typ_2 446 470 IPR003591 -
Vifa3g01767 1021 SMART LRR_typ_2 134 158 IPR003591 -
Vifa3g01767 1021 SMART LRR_typ_2 562 585 IPR003591 -
Vifa3g01767 1021 SMART LRR_typ_2 302 326 IPR003591 -
Vifa3g01767 1021 SMART LRR_typ_2 350 374 IPR003591 -
Vifa3g01767 1021 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 82 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01767 Vifa-Chr3 463349567 463353138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01767 3 1002 Receptor kinase-like Gene Family AT1G08590 43.093 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa3g01767 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01767 - - gmx:100813189 1539.63