Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01761 ATGGAACCCAACGTCAACAACACCAACCTACTCACCTCACTCTTCGAGCACCAAACCGTTACCCCCGTCACCGTCAACGCTTCTCCAGTTAACGGTTCAACCACCGATGGGTCCCACAGTAACCTTCTTTCCGTTACCGACAATAAGAAGAAGCGAGGTAGGCCAAGGAAGTACGAGTCTCCGCAAGAAGGTCTCGCCGCTAGGAAAGCTGCCGCTGCCGCCGCCGCTGCTGCCGCCGCTACTTCCCCTGCTCCTGCGACGTCGTTTTCGTCTTTGAATCTCAACAAGCAGAAAAAGTTTCATTCCTCTTCTCTAGGTAATTTGAGAGAGAACTTCAATCTTCACATTGTTACTGTTCTTGCTGGTGAGGATATTGGCCAAAATATTATGTCCCTCATGCAAAAACATAGTAGGTGTGAGATGTGCATTTTGTCTGCATCTGGTTCCATCTCTAGTGCCACTCTTCGTCAGCCGGCAACCGCTGGAGGCAATATTACATATGAGGGTCGCTTTGACATTATTTCCCTGACTGGATCCTATGTCCGTAATGAACATGAAGGCCGTTCTGGTGGTCTTAGTGTATGCTTAGCTCATTCTGATGGGCAACTTGTAGGTGGAAGCATTGCCGGACCCCTCAAAGCCGCTAGTCAAGTTCAGGTCATCGCTGGCACATTTTCTATTGAACCCAAGGACACTGGTGCCAGTATAAAAGGCAATACTTCTACCAGCAAGTTACCATCACCGGTTGGTGATCCCACATCAGGTTTAGGTTTCCGCCCAGCACTTAACTCTTCAAACGGGAATGCAATCCCGGGAAACAAAGAGCATCAAGCTATTGGAGGAAGTCATTTCATGTCTCCACAATATGGAGTAAACGTGGTTCCTTTCCATCCCTCGGATTGGGGAAGTCGTCCAGATTCTAGGAATGCTGGTTTTGAACTGATAGGAAGAACAGGCCATGAAGCTCACCACTCTCCTGAGAATGGGGCCTATTCCTGA 999 0.4885 MEPNVNNTNLLTSLFEHQTVTPVTVNASPVNGSTTDGSHSNLLSVTDNKKKRGRPRKYESPQEGLAARKAAAAAAAAAAATSPAPATSFSSLNLNKQKKFHSSSLGNLRENFNLHIVTVLAGEDIGQNIMSLMQKHSRCEMCILSASGSISSATLRQPATAGGNITYEGRFDIISLTGSYVRNEHEGRSGGLSVCLAHSDGQLVGGSIAGPLKAASQVQVIAGTFSIEPKDTGASIKGNTSTSKLPSPVGDPTSGLGFRPALNSSNGNAIPGNKEHQAIGGSHFMSPQYGVNVVPFHPSDWGSRPDSRNAGFELIGRTGHEAHHSPENGAYS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01761 332 ProSiteProfiles PPC domain profile profile. 109 248 IPR005175 -
Vifa3g01761 332 Gene3D - 113 240 - -
Vifa3g01761 332 MobiDBLite consensus disorder prediction 25 44 - -
Vifa3g01761 332 SUPERFAMILY AF0104/ALDC/Ptd012-like 111 225 - -
Vifa3g01761 332 CDD DUF296 113 225 IPR005175 -
Vifa3g01761 332 MobiDBLite consensus disorder prediction 45 63 - -
Vifa3g01761 332 Pfam Plants and Prokaryotes Conserved (PCC) domain 115 225 IPR005175 -
Vifa3g01761 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 253 IPR039605 GO:0003680
Vifa3g01761 332 MobiDBLite consensus disorder prediction 233 249 - -
Vifa3g01761 332 MobiDBLite consensus disorder prediction 232 256 - -
Vifa3g01761 332 MobiDBLite consensus disorder prediction 25 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01761 Vifa-Chr3 461431557 461436112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01761 49 331 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 41.009 5.75e-56 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01761 - - gmx:100809675 336.265