Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01756 ATGGCTTCTCTCTCTTGCTCAGTCAACGACCTTGCCCCACTTCTCACCACCACCGCAAACGCAACCGCCGTTGCATACTACCTCTGCACCCAATTCAATGCAATCTCAAAAAAACTCACCGACACAACCTACGCAGTAGACAACACCTACCTTCTCTTCTCAGCTTATTTAGTCTTCGCCATGCAGCTAGGTTTCGCCATGCTCTGCGCCGGTTCCGTTCGAGCCAAGAACACCATGAACATAATGCTCACCAACGTCCTCGACGCCGCCGCAGGCGGGCTCTCGTATTACCTCTTTGGCTTCGCTTTCGCCTTTGGAGCACCTTCCAACGGCTTCATCGGCCGCCATTTTTTCGGTCTAAGTGATTACCCTTCTCACTATGGTGACTACAGTTTCTTCCTCTACCAATGGGCATTCGCCATCGCCGCCGCGGGAATCACCAGTGGCTCCATTGCAGAGAGAACACAGTTCGTTGCTTATCTCATATACTCTTCTTTCTTAACCGGTTTTGTTTATCCCATTGTTTCGCATTGGGTTTGGTCTTCTGATGGTTGGGCCAGCTCAACCCGAACCGATGGCAATGTTTTATTCGGGTCCGGCGTCATCGACTTTGCCGGTTCAGGAGTGGTTCATATGGTTGGTGGTATAGCAGGGTTATGGGGAGCATTTATAGAAGGTCCAAGAATCGGCCGGTTCCATCGAACCGGTCGCTCTGTTGCTTTAAAAGGACACAGCGCGTCTTTGGTAGTGTTAGGTTCGTTTTTATTATGGTTTGGTTGGTATGGGTTTAACCCCGGTTCGTTTTTAACCATTGTAAAAAACTACGGGAATAACGGAAGGGATTATTATGGTCAATGGAGTGCTATTGGAAGGACGGGTGTCACAACGACATTGGCTGGTTGCACTGCGGCTTTAACGACTCTGTTTAGTAAACGGTTATTAGATGGACACTGGAACGTGATTGACGTGTGTAACGGTTTACTCGGCGGTTTCGCCGCGATAACCTCGGGTTGTTCGGTTGTTGAACCGTGGGCGGCGATTGTGTGTGGGTTTGTTGCGGCGTGGGTTTTGATCGGGCTTAATAAATTGGCGGTTAAGGTGAAGTATGATGATCCTTTGGAGGCGGCACAGTTGCATGGAGGGTGTGGCGCGTGGGGAGTGTTGTTTACAGGGTTGTTTGCAAAGAGGGAGTATGTTGAGGAGATTTATGGGATTGGGAGGCCGTGTGGGTTGTTAATGGGTGGTGGAGGGAGATTGTTTGCGGCGCAGGTGGTTGAGGTGGTGGTGGTGTGTGGGTGGGTTACGGTGACGATGGCGCCGTTGTTTTATGGATTGAATAAGTTGAAGTTGTTGAGGGTGTCGAGAGATGAGGAGAGTGCGGGGATGGATTTGAGTAGACATGGTGGATTTGCTTATGCGTATCATGATGAGGGGGATGATGAGTCGGTTAGGACATTAGGGTTTATGATGGGTAGAATTGAGCCTGCCGGTAGTGTTTCTCCCTCCGCCGGCGAAATGACAAACACCGCACCATCGATGTGA 1542 0.5026 MASLSCSVNDLAPLLTTTANATAVAYYLCTQFNAISKKLTDTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNGFIGRHFFGLSDYPSHYGDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWVWSSDGWASSTRTDGNVLFGSGVIDFAGSGVVHMVGGIAGLWGAFIEGPRIGRFHRTGRSVALKGHSASLVVLGSFLLWFGWYGFNPGSFLTIVKNYGNNGRDYYGQWSAIGRTGVTTTLAGCTAALTTLFSKRLLDGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIVCGFVAAWVLIGLNKLAVKVKYDDPLEAAQLHGGCGAWGVLFTGLFAKREYVEEIYGIGRPCGLLMGGGGRLFAAQVVEVVVVCGWVTVTMAPLFYGLNKLKLLRVSRDEESAGMDLSRHGGFAYAYHDEGDDESVRTLGFMMGRIEPAGSVSPSAGEMTNTAPSM 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01756 513 PANTHER AMMONIUM TRANSPORTER 18 468 - -
Vifa3g01756 513 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vifa3g01756 513 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vifa3g01756 513 SUPERFAMILY Ammonium transporter 44 453 - -
Vifa3g01756 513 Gene3D Ammonium transporter AmtB like domains 26 488 IPR029020 -
Vifa3g01756 513 NCBIfam ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vifa3g01756 513 FunFam Ammonium transporter 28 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01756 Vifa-Chr3 460680431 460681972 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01756 27 507 Inorganic Solute Cotransporters AT1G64780 78.926 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01756 K03320 K07573 gmx:100797209 818.15