Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01753 ATGGACGATTACACGAGAGAGATGATGGACCTCAAAACCCTCGTGACTCGCACTCTTGAGAAGAAAGGCGTTCTCGCTAGGATCCGAGCTGAATTAAGAGCTAGTGTCTTTGAAGCTATCGAAGAAGAAGATCGTGTCATCGAAAAGGATCAAGCTCTGCCTCCTGCATTGTTAGGTAGCTGTAACGATCGTGCTAAACAGCTTCACGCTTCTCCTTCTGGTAGACTTCTTACTGCACTGGTATGTGAATACCTTGACTGGGCACAACTTACTCACTCGCTAAAAGTTTATCTTCCAGAATGTAATTTGGAGAAAGATTTTTGGAAGTCTGAGTTGAAAGAGTTTAGTAGAAAAAATGGATATGATCTTAATAGAAATGGAGACACTGATGGAAGCCGTGTGGTATACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCTACCAACAGAGAAGTTGATACATATATCCCCAATCCAAGCTTACCTCCCCAGCTTATTTGTCAACTTCATAATCTGACAATGCATGCAGATACAGAGACAGATGAAGTGTATGCACAGATGACCTTGCAACCTCTAAATCCTGATGAGCAAAAAGAGGCATATCATCCTGCAGAGTTGGGAACTGTAAATAAACAGCCAACAAACTATTTCTGCAAAATTTTGACTGCCAGTGATACAAGCACTCATGGGGGTTTCTCTGTTCCTCGCCGCGCAGCTGAAAAAGTTTTCCCTCCATTGGACTTTTCCCAACAGCCTCCTGCTCAAGAGTTAATTGCCAGGGATTTGCATGGTAATGACTGGAAATTCAAACATATATTCCGCGGCCAGCCCAAAAGGCATTTGCTTACAACTGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATATGGAATGAAAAAAACCAGTTGCTTCTAGGCATTCGGCGTGCCAATCGCCCACAACATATGATGCCTTCATCAGTGTTGTCAAGTGACAGCATGCACTTGGGGCTGCTTGCTGCTGCAGCTCACGCCGCTGCAACGAACAGTCGTTTCACCATTTTCTATAACCCACGGTATAATTCATATCATATATTTCTTGATGATTACTTCAATGCAAGAATTTCTGACTTTGGACTAGCCAAGTTGATGAACATGAATCAAAGCAAAACCAACACTGGCATTAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAGAACATGCCTATCACAGCTCAAGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATTATTTCATGTAGAAGATGTGTTCAAGAAATGGAACAAGAAGATGAAGAGAAAGCAATATTAACTGACTGGGCTTATGATTGCTACAAGGATGGTGCTGTAGATGCATTGGTTGAGGGTGACAATGAGGCATTGGATGACAAAGAAAAGTTGGAGAAATTGGTAATGATTGCAATTTGGTGTGTTCAAGAGGATCCAGTTCTTAGACCAAGCATGAGAAATGTGATACATATGCTTGAAGGTACTGTTGAAGTGCAAGTTCCACCATACCCCTCACAAATTAGTATTCAATATTCTCTAATTTAA 1593 0.4181 MDDYTREMMDLKTLVTRTLEKKGVLARIRAELRASVFEAIEEEDRVIEKDQALPPALLGSCNDRAKQLHASPSGRLLTALVCEYLDWAQLTHSLKVYLPECNLEKDFWKSELKEFSRKNGYDLNRNGDTDGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLTMHADTETDEVYAQMTLQPLNPDEQKEAYHPAELGTVNKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRYNSYHIFLDDYFNARISDFGLAKLMNMNQSKTNTGIRGTKGYVALEWFKNMPITAQVDVYSYGVVLLEIISCRRCVQEMEQEDEEKAILTDWAYDCYKDGAVDALVEGDNEALDDKEKLEKLVMIAIWCVQEDPVLRPSMRNVIHMLEGTVEVQVPPYPSQISIQYSLI 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01753 530 ProSiteProfiles LIS1 homology (LisH) motif profile. 73 105 IPR006594 GO:0005515
Vifa3g01753 530 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 129 375 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa3g01753 530 SMART B3_2 218 320 IPR003340 GO:0003677
Vifa3g01753 530 Pfam LisH 77 103 IPR006594 GO:0005515
Vifa3g01753 530 ProSiteProfiles Protein kinase domain profile. 207 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01753 530 SUPERFAMILY Protein kinase-like (PK-like) 366 521 IPR011009 -
Vifa3g01753 530 Gene3D Transferase(Phosphotransferase) domain 1 363 516 - -
Vifa3g01753 530 Pfam B3 DNA binding domain 218 319 IPR003340 GO:0003677
Vifa3g01753 530 Pfam Protein kinase domain 367 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01753 530 SUPERFAMILY DNA-binding pseudobarrel domain 203 347 IPR015300 -
Vifa3g01753 530 FunFam Auxin response factor 216 320 - -
Vifa3g01753 530 Gene3D - 59 130 - -
Vifa3g01753 530 ProSiteProfiles B3 DNA-binding domain profile. 218 320 IPR003340 GO:0003677
Vifa3g01753 530 CDD B3_DNA 217 318 IPR003340 GO:0003677
Vifa3g01753 530 Gene3D - 216 319 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01753 Vifa-Chr3 459902236 459905539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01753 131 361 B3 DNA Binding Superfamily AT1G30330 88.793 1.60e-136 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa3g01753 Pkinase 7.6e-15 CL0016
TF B3 Vifa3g01753 Pkinase 7.6e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01753 - - psat:127108416 464.151