Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01748 ATGGAGAAAAATGTATATGCATTGTTTGTGATGTTGTTGATATTTACTCTTATTTTCTGTCTCTCTGAAGGGCTTAATGCAGAGGGAAAATACCTTATGGATATAAAAGGAAAACTGTTTGACAGATACAGTCATCTTGAGAATTGGAATTCAAGTGATTCAACACCTTGTGGTTGGAAAGGTGTTACCTGCAACAATGACATCAATCCATTGGTTGAATCTCTTGACTTGCATGCAATGAATCTCTCGGGCTCATTATCTTCCAGCATTGGTGGTTTGGTTCAGTTGCTTCATCTTAATCTTTCTCAGAACACATTCTCTGGTTTTATACCAAAGGAAATTGGAAACTGCTCAAGTTTGCAGGTTCTTAGTCTCAACATTAATCAATTTGAAGGTCAAATTCCTGTCGAAATAGGCCAGCTTTCAAATTTAACTGAATTGCATCTTTCAAACAACCAGCTCTCAGGAACTTTTCCGGACGAAATTGGTAACCTTTCTTCACTCTCGATATTTACTGTTTACACAAATCATCTCTGCGGATCTTTGCCGGCTTCTATCGGGAACCTTAAAAGATTGATTCGGTTTCGAGCCGGACAGAATATGATCTCAGGAAGTTTACCTCGAGAGATAGGTGGTTGTGAAAGCTTGGAGTATCTTGGTTTAACTCAAAATCAGATAAGTGGTGAAATACCGAAAGAACTTGGTTTACTCAAGAACTTGCAATGTTTGGTCCTTAGGGAAAATAATCTTCATGGTGCTATACCTAAAGAGCTTGGAAACTGTACAAATTTGGAGATTCTTGCTCTCTATCAGAACAATCTTGTGGAAGAGATTCCAAAGGAGCTTGGAAACCTTGAAGTCCTAAAGAAACTATACCTTTACAGGAATAAGTTGACAGGAAATATTCCAAGGGAGATTGGAAACCTTTCTGTTGCAATTGAGATTGATTTTTCGGAGAATCTTCTTACAGGAGAGATACCGATCGAGTTGGTTAATATCAAAGGCTTGCAATTGCTTCATCTCTTCGAGAACAAGCTAACCGGTGCAATTCCGAATGAGTTCACAACCTGGAAAAACCTAACCGAGCTTGATCTCTCTATCAATCACCTCAATGGTACTATTCCGATTGGATTTCAGGATTTGACCAAACTGTACTCATTGCAACTCTTCAACAACTCATTAAGTGGTAGAATTCCTTATGCACTTGGAGCAAATAGTCCACTTTGGGTGCTTGATTTGTCATTCAACAACTTAGTTGGAAGGATTCCAATTCATCTTTGCCAACAGTCTAAATTGATGATGTTAAACTTAGGATCGAACAAACTCGCCGGAAATATACCTCATAGAATTACAAGCTGCAAGTCTTTGGTGTATCTTCGCCTCTTCGGTAACAACTTGAGGGGAAAGTTTCCTTCGAATTTATGCGAGCTTGTAAATATTTCTACAGTTGAGTTGGAACAGAATGAATTCACTGGCCCTATTCCTCCACAAATTGGTCACTTCCAAAATTTGCAAAGACTCCACCTTTCTAACAACCGTTTTTCGGCTGAATTGCCGAAAGAAATCGGTAACCTCTCTCAGTTGGTATCCTTTAATGTCTCATCGAATTATCTTTTTGGTAGACTGCCTATGGAACTTTTCAACTGCAGGAAGCTCCAAAGGCTCGACCTCAGCAACAACGGCTTTGTAGGTACTTTATCAGGTGAGATAGGAACTCTTTCACAGTTAGAGCTTCTAAGGCTCTCAAATAACAATTTTTCTAGTAAAATTCCATTGGAAGTCGGAAAACTCTTGCGGTTGACCGAACTACAAATGAGCGAAAACTCATTTTGTGGTTACATTCCACAAGAGTTAGGTGCCCTTGCATCCCTGCAAATTGCACTTAATCTCAGCTATAATAAACTTTCAGGCCAAATACCTTCCCAACTTGGGAATCTTATTATGCTAGAATCTCTCCAACTCAACAACAATCACTTGAGCGCAGAAATTCCGAACTCCTTTAACAGGCTTTCAAGTTTACTTTCATTCAACTTTTCATACAACGATCTTTTCGGTCCTTTACCTTCTTTACCTCTCTTTCAAAACTCCACATTCAGCTGCTTTTCAGGTAACAAAGGATTGTGTGGAGGACTCCTTGTCCCTTGTCCAAATTCAACATCATATTCCCCTCCAAATAAACTAGGAAAAATTCTAGCTATAGTTGCAGCTATTGTTAGTGGAGTTTCATTGATTTTAATTCTGGTTATCATATATCTAGTGAAAATTTTCACTGTGCCAAACCAAGATATAGATAAACCAAATTCTCCAAATGTTTCAAACATGTACTTTTTCCCGAAAGAGGAGTTGGATTTCCAAGACATGGTTGAAGCTACCGAAGATTTTCATTCCAAATATGAAATCGGAAAAGGTGGCAGTGGAACTGTGTATAGAGCAGATATATCAAATGATCATAATCATATAAACACAATTGCTGTAAAGAAACTTACATCAAACAGTAACAGCATTGATCTAAACGGCTGCTTCCGCGCTGAAATCTTAACTTTGGGCAAAATAAGGCATAGAAATATCGTGAAATTATACGGTTTCTGCAACTACAGTGGCTCTAATATGCTACTTTATGAACACATGGAAAAGGGTAGTTTAGGAGAGTTACTTCATGGAGAATCTTCTTCTAGTCTTGATTGGTATTCCAGGTTTAGGATTGCTCTAGGAACTGCACAAGGACTATCTTATTTGCACCATGATTGCAAGCCGAGGATTATCCACCGGGATATCAAGTCCAATAACATACTTATCGACCATGAATTTGAAGCTCATGTTGGTGATTTTGGTTTGGCTAAGCTTATTGATATCTCAAAGTCAAAATCAGTGTCTGCAGTAGTTGGCTCTTATGGCTACATTGCCCCTGAGTATGCATACACAATGAAAGTCACAGAAAAATGTGATGTGTACAGCTATGGAGTAGTCCTATTGGAGTTACTAACTGGGAAGAAGCCAATCCAATCATTGGATCAAGGTGGTGGTGATCTTGTAACATGGGTGACAAATAATATCAACAAATATTCATTGAAACTAGACATCATTGATGCAAAATTGGACCTACTAGATGAAATTGATGTTGCTCAAATATTTGATGTCTTGAAAATTTCTTTACTATGCACCGACGCTTATCCTTCTAGACGACCGACCATGCGTAAAGTTGTTGCAATGCTTACAAGTTCTAGTAAAAGGAAAGAGCAATCTTTGTTCTCTCCATGTCATCAATCAAGTAATGTTGAAGAATGA 3285 0.3833 MEKNVYALFVMLLIFTLIFCLSEGLNAEGKYLMDIKGKLFDRYSHLENWNSSDSTPCGWKGVTCNNDINPLVESLDLHAMNLSGSLSSSIGGLVQLLHLNLSQNTFSGFIPKEIGNCSSLQVLSLNINQFEGQIPVEIGQLSNLTELHLSNNQLSGTFPDEIGNLSSLSIFTVYTNHLCGSLPASIGNLKRLIRFRAGQNMISGSLPREIGGCESLEYLGLTQNQISGEIPKELGLLKNLQCLVLRENNLHGAIPKELGNCTNLEILALYQNNLVEEIPKELGNLEVLKKLYLYRNKLTGNIPREIGNLSVAIEIDFSENLLTGEIPIELVNIKGLQLLHLFENKLTGAIPNEFTTWKNLTELDLSINHLNGTIPIGFQDLTKLYSLQLFNNSLSGRIPYALGANSPLWVLDLSFNNLVGRIPIHLCQQSKLMMLNLGSNKLAGNIPHRITSCKSLVYLRLFGNNLRGKFPSNLCELVNISTVELEQNEFTGPIPPQIGHFQNLQRLHLSNNRFSAELPKEIGNLSQLVSFNVSSNYLFGRLPMELFNCRKLQRLDLSNNGFVGTLSGEIGTLSQLELLRLSNNNFSSKIPLEVGKLLRLTELQMSENSFCGYIPQELGALASLQIALNLSYNKLSGQIPSQLGNLIMLESLQLNNNHLSAEIPNSFNRLSSLLSFNFSYNDLFGPLPSLPLFQNSTFSCFSGNKGLCGGLLVPCPNSTSYSPPNKLGKILAIVAAIVSGVSLILILVIIYLVKIFTVPNQDIDKPNSPNVSNMYFFPKEELDFQDMVEATEDFHSKYEIGKGGSGTVYRADISNDHNHINTIAVKKLTSNSNSIDLNGCFRAEILTLGKIRHRNIVKLYGFCNYSGSNMLLYEHMEKGSLGELLHGESSSSLDWYSRFRIALGTAQGLSYLHHDCKPRIIHRDIKSNNILIDHEFEAHVGDFGLAKLIDISKSKSVSAVVGSYGYIAPEYAYTMKVTEKCDVYSYGVVLLELLTGKKPIQSLDQGGGDLVTWVTNNINKYSLKLDIIDAKLDLLDEIDVAQIFDVLKISLLCTDAYPSRRPTMRKVVAMLTSSSKRKEQSLFSPCHQSSNVEE 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01748 1094 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vifa3g01748 1094 Gene3D Ribonuclease Inhibitor 426 722 IPR032675 -
Vifa3g01748 1094 ProSitePatterns Protein kinases ATP-binding region signature. 800 827 IPR017441 GO:0005524
Vifa3g01748 1094 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 405 719 - -
Vifa3g01748 1094 SMART LRR_typ_2 646 669 IPR003591 -
Vifa3g01748 1094 SMART LRR_typ_2 141 165 IPR003591 -
Vifa3g01748 1094 SMART LRR_typ_2 501 525 IPR003591 -
Vifa3g01748 1094 SMART LRR_typ_2 93 117 IPR003591 -
Vifa3g01748 1094 SMART LRR_typ_2 381 405 IPR003591 -
Vifa3g01748 1094 SMART LRR_typ_2 573 597 IPR003591 -
Vifa3g01748 1094 SMART LRR_typ_2 285 309 IPR003591 -
Vifa3g01748 1094 SMART LRR_typ_2 237 261 IPR003591 -
Vifa3g01748 1094 Pfam Protein kinase domain 794 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01748 1094 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 24 182 - -
Vifa3g01748 1094 Gene3D Ribonuclease Inhibitor 178 425 IPR032675 -
Vifa3g01748 1094 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 485 1072 - -
Vifa3g01748 1094 FunFam Leucine-rich repeat receptor-like protein kinase 876 1086 - -
Vifa3g01748 1094 Gene3D Transferase(Phosphotransferase) domain 1 876 1090 - -
Vifa3g01748 1094 ProSiteProfiles Protein kinase domain profile. 794 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01748 1094 SMART serkin_6 794 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01748 1094 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 183 276 - -
Vifa3g01748 1094 ProSitePatterns Serine/Threonine protein kinases active-site signature. 920 932 IPR008271 GO:0004672|GO:0006468
Vifa3g01748 1094 Gene3D Phosphorylase Kinase; domain 1 760 875 - -
Vifa3g01748 1094 SUPERFAMILY Protein kinase-like (PK-like) 768 1071 IPR011009 -
Vifa3g01748 1094 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 758 875 - -
Vifa3g01748 1094 SUPERFAMILY RNI-like 74 428 - -
Vifa3g01748 1094 Gene3D Ribonuclease Inhibitor 24 177 IPR032675 -
Vifa3g01748 1094 SUPERFAMILY RNI-like 350 685 - -
Vifa3g01748 1094 FunFam Piriformospora indica-insensitive protein 2 278 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01748 Vifa-Chr3 458753319 458756698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01748 50 1071 Receptor kinase-like Gene Family AT1G73080 38.260 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa3g01748 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01748 - - psat:127091273 1971.82