Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01744 ATGTCAAACAACCAAGACCAGACATTTGCATTGAAGGACAAGTTACGAGAACTTGTTAATACCATTGTTGAAGGCGATGATTTCACTCTGCATGCTGCTGATGAAGCCATCACTGCACTTTCTGTACTCAGGGACTTGAAATCCAGTGTTTCTTTCTCGAGAAAATTCGATGGTTTGTCTGCTCCTGTTCCTCCGCAGTTTCGTTGCCCCATCTCAGGTCTCATCATGACTGATCCTGTTATCTTGACCAATGGACAGACTTATGATCGACCATTCATTCAAAATTGGCTGAATGAAGTGCATAGAGATTGCCCGCAAACTCAGCATGTCCTCTCTCACTCCATTCTTTCTCCTAATTATTTGGTGCAAGACATGATTTCGAGGTGGTGTAAGGAGCATGGAGTTGAGCTACCAATGCCTGTTGGGGATATTGACAATGGAGAACCAACTGAAGCGCATAAGTATCGTTTACGGTCATTGCTTCACAAACTGTCATTATCTGCTTTGGAGCAAAAAGAAGCTGCGAGAGAGCTTCGGCTTTTAGCGAAGCAAATGCCTCCGTTTCGAACACTCTTTGGTGACTCTGAAGTGATTAAAAAATTGCTTAGTCCGTTATCACAAGGCATGGCTTGTATAGACCCGGAACTCCATGAAGACTTGATCACGGCTGTTCTGAATCTCTCAATCGACGATAACAATAAGAGACTTTTTGTAGAGGATGAAAAGCTTATCACCTTTATTATCGATTCGTTGAAATCAGGAACCGTTCAAACAAGAAGCAATGCAGCAGCAGCAATTTTTTCATTATCAGCACTTGATATCAACAAGCAAATCATTGGAAAAACCGGTGCGATTAAATATTTGGTTGATCTTTTAGAAAAAGGACATCCATCATCAACGAAAGACGCTGCTTCGGCTCTATTCAATCTATGTATTGCACATGAAAATAAAGCGAGAACAGTTCGAGAAGGCGTGGTTCAGGTTATTCTCAGCAAGATCATTGTGGACCGTGTTCTAGTAGACGAGTTTTTGGCCTTGTTGGCACTTCTCTCTAGCCATTCCAAGGCTGTCGCGGCATTGGGAAGTCACGGCGCTGTCCCTTTCTTTATGGATATTTTAAGAGATAGCAGCATTTCGGATCGCAGCAAGGAGAACTGTGTTGCAATCTTGTACATAATATTTTTCAATGATAAAACAAAGAGGAAGGAAATTAGAGATGATGAAATATCCAATGGTACATTGGCTAAGCTTGCAGAATGTGGAACTTCAAGAGCTAAGAGGAAAGCTTGTGGTATTCTTGATAGGCTCAAGATAGCTCAATCCTCAAAGCACACCACTTAA 1341 0.4183 MSNNQDQTFALKDKLRELVNTIVEGDDFTLHAADEAITALSVLRDLKSSVSFSRKFDGLSAPVPPQFRCPISGLIMTDPVILTNGQTYDRPFIQNWLNEVHRDCPQTQHVLSHSILSPNYLVQDMISRWCKEHGVELPMPVGDIDNGEPTEAHKYRLRSLLHKLSLSALEQKEAARELRLLAKQMPPFRTLFGDSEVIKKLLSPLSQGMACIDPELHEDLITAVLNLSIDDNNKRLFVEDEKLITFIIDSLKSGTVQTRSNAAAAIFSLSALDINKQIIGKTGAIKYLVDLLEKGHPSSTKDAASALFNLCIAHENKARTVREGVVQVILSKIIVDRVLVDEFLALLALLSSHSKAVAALGSHGAVPFFMDILRDSSISDRSKENCVAILYIIFFNDKTKRKEIRDDEISNGTLAKLAECGTSRAKRKACGILDRLKIAQSSKHTT 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01744 446 PANTHER U BOX DOMAIN-CONTAINING 28 435 - -
Vifa3g01744 446 CDD RING-Ubox_PUB 64 116 IPR045210 -
Vifa3g01744 446 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 325 IPR000225 GO:0005515
Vifa3g01744 446 Gene3D - 157 443 IPR011989 -
Vifa3g01744 446 SMART arm_5 353 395 IPR000225 GO:0005515
Vifa3g01744 446 SMART arm_5 272 312 IPR000225 GO:0005515
Vifa3g01744 446 Pfam U-box domain 63 133 IPR003613 GO:0004842|GO:0016567
Vifa3g01744 446 SUPERFAMILY ARM repeat 169 436 IPR016024 -
Vifa3g01744 446 SUPERFAMILY RING/U-box 51 137 - -
Vifa3g01744 446 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Vifa3g01744 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 136 IPR013083 -
Vifa3g01744 446 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Vifa3g01744 446 Pfam Armadillo/beta-catenin-like repeat 275 311 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01744 Vifa-Chr3 457457598 457459267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01744 125 445 U-box Gene Family AT3G07360 50.152 5.13e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01744 - - gmx:100806132 528.094