Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01743 ATGAACTGCTTCCCGTGTTGTGGCCCTCAAAAAAATAAGCAAAGTAATAGTAAGAGGGAGCATGGTACTACAACACCGATGGAAGTTACTTCTGCTGCGAAAACACCAGATATGAAGAAACAAAGGGGGGACGAGCAAATGCAAGGAGACGCGACAAATATTAACGCGCAAAATTTCACTTTTCGTGAGCTAGCGACAGCGACAAAGAATTTCCGCCAGGAATGTCTTCTTGGTGAAGGAGGCTTTGGAAGAGTCTATAAAGGGGTTATTCCTGCAACTGGACAGGCCGTGGCCGTGAAGCAACTCGACAGACATGGGACAGAAAACAGCAAGGATTTTCTGTCTGAGGTTGCTCTGCTGAGTCATGTTCATCATGACAATCTTGTCAATCTCATTGGTTATTGTGCTGATGGCGAACAACGGCTTCTGGTATACGAATACTATCCGGCCTATACTCTTGAAGATCGTCTTCTTGGGAATAAAACGGATGAACCGCCATTGAATTGGTTTGAAAGAATGAAGGTAGCAGCTGGTGCATCTAAAGGACTAGAATACTTGCATGATAATGCCAATCCGCCAGTTATATTCCGTGACTTGAAAGCAGTCAACGTCTTGTTGGGTACTGAAGCTGATCTTAATGCAAAACTATATGATTTTGGATTGGCCAAGCTTTGTGGTGGAGACAAGATGAACAATGCACCTCCAAGAGTTATGGGTACATATGGTTATTGTGCTCCTGAATATACAAGAACAGGTCAAGTTTCATTGAAATCAGATGTATACAGTTTTGGAGTTATCTTGCTCGAACTTATCACTGGTCGACGTGCCGTTGATACCACAAAGCCTAACGAAGAGCAAAATCTAGTTTCATGGGCACAACCCTTATTTAGGGACCCGAAAAAGTATCCAGATATGGCGGATCCACTTCTCAATAAACATTTTCCAGAAAAGGATCTTAATCAAGCGGTTGCAATAGCAGCAATGTGCTTACAGGAGGAACCAGAAGCCCGTCCTTTGATCGGTGATGTTGTAACCGCTCTGAGTTTTCTATCGACGACTCCAACGGAACCTATTCCGCCACCCTCACTTCCCACTGCCACCTCGGTCTCTAGGCATAGTACTGCTACTGAAAGCGAATATGAAAGTGAAAGTGAGAGTGAATCAGAAGGAGAAACTTCAGATGATGAAGGCACTGACCATGAAGAAGACAATAAAACTGCACAAAATCATGTAGCAGCCAGTGAAAAACCTCAGAAAAGGGCAACTTCGAAGAAATCAAGCCGAAAAAGCAGCACAAAATCAAGGAATGAAACTACTAGTAAAGATTCAGCAGAGGGAGGTGCTTCTTCCAGTGGCAAAACCAGTATAAAATGGCAAAGCTTTGTTGGTAATTTAAGCCAAAAGTCAAACAGCTCAAAAAAATCTTCTACCAGAGAAAAAAGCCAGAAGAGCAGCAAAAAAATTTCAATCAAAGAACTAAGCCAAAAATGCAGTAGAAAATCTTCCACCAAAGATTTAAGCCATAAGAGTAGCAGAAAATCATCTGCTAAAGTTTCGAGTCGCATGCAATCGGAAGATGGAAGCATGAATTCGTCTCACAGAAGTGGCTCAAGCCAATATACAAGCAGCAGTATGTCTAGCAGCAGCAGAGGAAGTGGCAGTGCTCACTCGGATGTTAAAGGTAGCAGAAGGACAGGAGAGAGCATGCGTTTAGCCATGGAATCTGGCGATGAGGGAAGCAATCCTCCTTTTGATCGTATAAGTAGCAGTGACTCAGATCGGCGATGA 1788 0.4329 MNCFPCCGPQKNKQSNSKREHGTTTPMEVTSAAKTPDMKKQRGDEQMQGDATNINAQNFTFRELATATKNFRQECLLGEGGFGRVYKGVIPATGQAVAVKQLDRHGTENSKDFLSEVALLSHVHHDNLVNLIGYCADGEQRLLVYEYYPAYTLEDRLLGNKTDEPPLNWFERMKVAAGASKGLEYLHDNANPPVIFRDLKAVNVLLGTEADLNAKLYDFGLAKLCGGDKMNNAPPRVMGTYGYCAPEYTRTGQVSLKSDVYSFGVILLELITGRRAVDTTKPNEEQNLVSWAQPLFRDPKKYPDMADPLLNKHFPEKDLNQAVAIAAMCLQEEPEARPLIGDVVTALSFLSTTPTEPIPPPSLPTATSVSRHSTATESEYESESESESEGETSDDEGTDHEEDNKTAQNHVAASEKPQKRATSKKSSRKSSTKSRNETTSKDSAEGGASSSGKTSIKWQSFVGNLSQKSNSSKKSSTREKSQKSSKKISIKELSQKCSRKSSTKDLSHKSSRKSSAKVSSRMQSEDGSMNSSHRSGSSQYTSSSMSSSSRGSGSAHSDVKGSRRTGESMRLAMESGDEGSNPPFDRISSSDSDRR 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01743 595 ProSiteProfiles Protein kinase domain profile. 71 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01743 595 MobiDBLite consensus disorder prediction 380 398 - -
Vifa3g01743 595 FunFam Serine/threonine-protein kinase PBS1 148 361 - -
Vifa3g01743 595 Pfam Protein kinase domain 73 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01743 595 MobiDBLite consensus disorder prediction 473 512 - -
Vifa3g01743 595 MobiDBLite consensus disorder prediction 441 472 - -
Vifa3g01743 595 Gene3D Transferase(Phosphotransferase) domain 1 150 356 - -
Vifa3g01743 595 MobiDBLite consensus disorder prediction 10 31 - -
Vifa3g01743 595 MobiDBLite consensus disorder prediction 516 559 - -
Vifa3g01743 595 SUPERFAMILY Protein kinase-like (PK-like) 57 382 IPR011009 -
Vifa3g01743 595 SMART serkin_6 71 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01743 595 FunFam probable serine/threonine-protein kinase RLCKVII 43 147 - -
Vifa3g01743 595 Gene3D Phosphorylase Kinase; domain 1 41 147 - -
Vifa3g01743 595 PANTHER OS07G0668900 PROTEIN 3 356 - -
Vifa3g01743 595 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Vifa3g01743 595 MobiDBLite consensus disorder prediction 10 47 - -
Vifa3g01743 595 MobiDBLite consensus disorder prediction 353 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01743 Vifa-Chr3 457454551 457456941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01743 1 379 Glycoside Hydrolase AT3G07070 57.107 2.57e-152 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vifa3g01743 Pkinase 2.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01743 - - gmx:100804526 568.155