Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01729 ATGGAAAACAACAACAACAAAAGCCAAAAAATGAATTCTGAAGCTGGTCCTTCTTCTGCCAATCACAGCACTAGGGAGAAAATGTTCATGTTCGATTTAAACCAACTTCCTGATTCTGATTATTCTGAGGATTCTGCTGATGATTGCGTGGCAACAAGAGAAGATGCAGCCCCCCAAGGTGATGATGAAGTTCAGAAATCAGTATCTGATTTTTCATTCCCTATTCTTGAAGGACGTGTTGTTTCAGATGATGAAGTGAGTATGGAAAACTATAAGAATCCAGTGATGAACTCTGATGAAATTCGTAGGGCTTTGAAAGGGAAAATGCCTATGAATTATGCTGAAGGAGGTTGTTCCAAAGAAGCTGCTGCTTATATTGATGCAGCTGCTGCTGTTCTTGGTGATGATGATGATGAAGAAGAAGAAGATGAAGAAGGAGTGAAAGATATATCAAGTGATGAGGATGATGAAGTTCCTTCTAGCGATGAAGACAGTGCCATTGAAGGAATCCTGATGCTTCATGAACAAGATCCTAATGTTGCCAGTGGATCTCGTCCTCAAAGCAAGAGAAAGATAGATTTCTCTGAATACTACAAACCTCCTTGCACTAGGATTGGAGGAGCTGGACCGAAAACTGTGATCCAAGTCGAAAGCATCAAAGATATAGTGGATGATGGTTATCGTTGGCGTAAATATGGACGCAAAGAAATCAAAGGAAACCCTAATAACCCTAGGGGATACTATCGCTGCACATCACAAACCTGCACTGCAAGAAAACAGGTGGAGAGGGATGCGAAAAACTCAAAGTATGTGATTGTTTCATATGAAGGGATACATAACCATGGATTACCACCCACCAAACCTAAGACCCAAACACCAACACCAGCACCAGCACCAGCAACAACAACAACACCAACACCAACACCAGCAACAACACCATCGAGCAATACCACTACACCTGCGGTAAGTGCGAGTACGAGCAAACCCGCGCGACCAATACTTCCATATCCATCTGCTAACTCTCTCTCTACTTATCCCCACTATGCAAACTTGGGATATTTTCCTGGTTACAGATCTTATGGGACGATGAACTATATGTGGCCTAATAACCCTCATTTCTACAGCATGGCTCATAAGAGTAACATGGCTGTGCCATCTTATGGCACTGTTAGTAGTTCAAATTTTCAGAACCGTTTTGCTACTTCTTTTTCTAACCCTCAAAATGCTGCAAGTGGGCCTGCTACTGGTAGAGCGGCACCGCTTTCTGGTTTTCCAATATCACCATCACTGCCACCTTTTGATACTGTACCCTATGGTCATGATTTTCTTCATATTCGTGGGTATACTACTTCTGCTGCTGCAGCTGCTACTACTGCTCAACTCTCTCCTTTGAGCGAGTCTACTACTGCTCAACGCTTTCCTTTGAGAGATGCTAATGCTACTGCTGCTCAACTCTCTCCTTCGAGAGATGCTAATGCTACTCCTGCTCAACTCCTTCCTTTCAGAGATGCTAATGCTACTACTGCTCAACTCTTTCCTTTGGGAGATGCTAATGCTACTACTGTTCAACTCTTTCCTTTGAGAGATCCTACCCCAGCTGAGGAAGAAGACAAGGATGTTGTTTCTAAGAACGAATGA 1638 0.4304 MENNNNKSQKMNSEAGPSSANHSTREKMFMFDLNQLPDSDYSEDSADDCVATREDAAPQGDDEVQKSVSDFSFPILEGRVVSDDEVSMENYKNPVMNSDEIRRALKGKMPMNYAEGGCSKEAAAYIDAAAAVLGDDDDEEEEDEEGVKDISSDEDDEVPSSDEDSAIEGILMLHEQDPNVASGSRPQSKRKIDFSEYYKPPCTRIGGAGPKTVIQVESIKDIVDDGYRWRKYGRKEIKGNPNNPRGYYRCTSQTCTARKQVERDAKNSKYVIVSYEGIHNHGLPPTKPKTQTPTPAPAPATTTTPTPTPATTPSSNTTTPAVSASTSKPARPILPYPSANSLSTYPHYANLGYFPGYRSYGTMNYMWPNNPHFYSMAHKSNMAVPSYGTVSSSNFQNRFATSFSNPQNAASGPATGRAAPLSGFPISPSLPPFDTVPYGHDFLHIRGYTTSAAAAATTAQLSPLSESTTAQRFPLRDANATAAQLSPSRDANATPAQLLPFRDANATTAQLFPLGDANATTVQLFPLRDPTPAEEEDKDVVSKNE 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01729 545 ProSiteProfiles WRKY domain profile. 218 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g01729 545 MobiDBLite consensus disorder prediction 307 326 - -
Vifa3g01729 545 MobiDBLite consensus disorder prediction 277 332 - -
Vifa3g01729 545 MobiDBLite consensus disorder prediction 530 545 - -
Vifa3g01729 545 MobiDBLite consensus disorder prediction 524 545 - -
Vifa3g01729 545 MobiDBLite consensus disorder prediction 288 306 - -
Vifa3g01729 545 Pfam WRKY DNA -binding domain 224 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g01729 545 MobiDBLite consensus disorder prediction 131 163 - -
Vifa3g01729 545 Gene3D WRKY domain 208 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa3g01729 545 MobiDBLite consensus disorder prediction 132 163 - -
Vifa3g01729 545 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 99 311 IPR044810 GO:0003700
Vifa3g01729 545 MobiDBLite consensus disorder prediction 1 70 - -
Vifa3g01729 545 SMART WRKY_cls 223 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g01729 545 MobiDBLite consensus disorder prediction 46 61 - -
Vifa3g01729 545 MobiDBLite consensus disorder prediction 1 25 - -
Vifa3g01729 545 SUPERFAMILY WRKY DNA-binding domain 221 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01729 Vifa-Chr3 455667958 455670524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01729 210 287 WRKY Transcription Factor Family AT5G56270 57.692 4.57e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa3g01729 WRKY 1.3e-21 CL0274