Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01721 ATGAAGTCATTAATGGGGACCGAGCTTATGAGGATATGTGTTAAAGAAGATGATGATTTTCCATCAGTTCCACCAGGTTTTGAGTCATATACATCTTTCGCATTGAAGAGGGTGGAAGAAAATGAAAAACACAATGATAAAAATCTGACTAGTTCCTCTACAAGTGCTTCTGAGTCACAGTCAACTCCGGTTGGAAATGGTGTTCAATTTAGTGATACTGCAAAGGTTTCTAGATCCCTTCGACGAAGACCATGGATTAACCATGGAAAGTGTGAGAACGGTTCTGACGAAGACTTTGATTCTGAGCGGCATGATCAAAATTTCTCCTCGAGACCTTGTCTTCCTAAAGGAGTCATTAGAGGATGTCCAGATTGCCGTAATTGTCAAAAGGTCATTGCCAGATGGAAACCAGAAGATGCTCATACGCCACATCTCGAGGATGCTCCTGTTTTCTACCCTACTGAAGAGGAATTTCAAGATACTTTGAAATATATATCAAGTATTCGCTCAAGAGCTGAACCATATGGAATTTGTCGTATTGTTCCCCCACGTTCATGGAAACCCCCTTGTCCTCTCAAGGAAAAAAGTATATGGGAGGGTTCTAAATTTGCCACCCGTGTTCAGAGAATTGACAAACTTCAGAATCGTAATTCAGGGGCAAAGAAGTCAAGGATTCAAAATAATATGAAAAGGAAGAGGAGATGCACGAGAATGGGAGTGGATAATGGCACTGGAACTGAGCCTAATGCAGTGTTTTGTGAAGCTGAAAGGTTTGGGTTTGAACCTGGCCCAGAATTTACCTTGGAAACATTTAAGAGATATGCAGACGAGTTTAAGCTCAAATACTTCAGAAATGATAATTTATCTCATCCAAGCACTAATACAGCAATTTTAAATGGTATCTCGGATCCTTCTGTGGAGAACATTGAGGGTGAATACTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGATTTTTGGGAGTGGTTTTCCCAGCAAGTCTAGTCAAGTTTCTGTTTCTTATGATCAATACATAAAATCTGGCTGGAATTTAAATAACTTTGCGAGGTTACCTGGATCTCTGCTCTCTTATGAAACCAGTGATATATCTGGTGTAGTAGTGCCATGGTTGTATATAGGAATGTGCTTTTCCTCATTTTGTTGGCATGTGGAAGATCACCATCTATATTCATTGAATTATATGCATTGGGGTGCTCCAAAACTGTGGTATGGTGTCCCTGCAAAAGATGCGTGCAAATTGGAAGAGGTCATGCGAAAGCATTTACCCGAACTTTTTGAAGAACAACCTGACTTGCTTCATAAGCTGGTCACACAACTTTCTCCTTCTATTCTTAAGTCAAAAGGTGTGCCGGTTTATAGGTGTGTCCAAAACCCTGGAGACTTTGTTTTGACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGTGGCTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGTTACCCCATGGGCATATTGCTATAGAGCTGTACCGGGAGCAGGGGCGCAAGACTTCCATATCTCATGATAAGCTATTGCTTGGGGCTGCTAGGGAAGCAGTGCGAGCCCAGTGGGAACTTGCTTTGCTGAAGAAAAACACTTTGGATAATCTAAAATGGCAAGATGTCTGTGGAAAGGATGGTCTTTTGGCAAAAGCGTTCAAGGCACGTGTTGAGATGGAGCGAGTAAGAAGGGAATTTCTTTGCAGTTCTTCAAAGGCAGTAAAAATGGAGAGTAGTTTTGATGCTGCAAGTGAAAGGGAATGTAACATCTGCTTTTTTGATTTACACCTATCTGCTGCTGCCTGTCATTGTTCCTCAGATAGATATTCTTGCTTGGATCATGCAAAGCAATTTTGTTCATGCTCTTGGAACTCCAAATTTTTTCTCTTTCGTTATGATATTAGTGAACTAAATGTTCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCAAAGTCACATCTTGGGCTGGCACTAACTTCTTATGTCTCAGTTGATAAAAAACCAGTAGTTCAGGGATTGAAATTGCATTCATCCAACTCGTTTCATTCTTCCCGGGTCAATATGAATAAAGAGATGGCTTTGCATCCAACAAATAAATTTATTGACAATTCTCAATCGACAGATGCTCCAATAGTGGATCAAGCAACTTCAGCAAATAGCAAGGATCAGAGCTATCTTAAACAGGGGAATTCAGCAGAAATTGTATCTCCTGTGAGTCACACGAAGGAACTGTCAATATTTAATAGCTCTAAACCTACATGTGAAATAGCTAATGGTAAAGTCTGTGTTATTAAAGAAGAATCTGTTATTTGCAAATCAAAGCCGAATGCTCCTGTTTGTCAATTCAATGAAGAGGATTCTTCATATGCTTTATCTCCGCCTCTAGCTCAACATGAAAATGAGAAAAGTTCACATTGCAGATCTGATGATATCATACTTCTTAGTGATGATGAGGATGAAGAAATGAAGATGTCTGATTCAAAGAGAAAGAAGGAGGTTCCTCAAATGCTTGCTGGTTCTAGAAATAAAGCAAGCCTGTGTAATGATATAGAATATAAAAGTTTGACCATCCCTTTGACAGATGCTTCTGTGGTGGGTGAGAAGGAGGCTATTATGTTGCCTCGTGAAGATCCGGGTTCGTGTTCAACTCAGCTTTTGAATGTGAAACAAGAACCTCATGAACAGAGAGGACCAAATCTACCTTCTACGCCAGTAGATCTTTCTTTTCATATAGGTCTTACAGGTGCAGAATCAGTTAGGAACATTCCAGCTTCTTCAAGAGTGGAGGCCGGTGATCATAGTTTGGAAAGTTCGGAGGTTCGTCCTCCTCTTAAACCACAACCTTCCGGCACTATTAAGGCTAAGAGCGAGGATAATCATGAGAAGTTAGGTGGCTGTTCCACTTCTAATGTAGCAGATAATGCAAGAGCTATTAATGGAAATGTCTCGTGTGGTCCAAACAATTACCGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTACGTCGTATCAACTGCAACGTTGAGCCTTTGGAATTTGGAATTGTATTTTCTGGAAAGTCATGGTGCAGCAGTCAGGCTATTTTTCCAAAGGGATTTAGAAGCCGTGTTCGATATATAAATATCTTAGATCCGTGCAGTACATGCTACTATATTTCAGAAATTCTTGATGCTGGACGCGGTTCGCCTCTATTTATGGTTTCCTTGGAAAATAGTCCAAATGAGGTCTTCATTCATATGTCTGCAACAAAATGCTGGGATCTGGTTAGAGAGAGAGTGAATCTAGAGATAGCAAAACAACATAAGCAGGGAAGAAAAGGTCTTCCTCCTTTACATCCTCCTGGAAGCCTTGATGGCTTTGAAATGTTTGGATTTTCTTCACCAGCAATAGTGCAGGCTATTGAGGCACTAGATCGAAGTCGAGTCTGTAATGAATACTGGGACTCTCGGCCATTCTCTCGGCCTCAAGGGCAGCTTTCACAAGCTGGCCAGACCACTGTGAATGGTGGAGGTGGGACCGATCAAGGGGTTCCCACAAATCAGCACACACATATTGGAACTGTTGCAGCAGTAAAGAGCCTATTTAAAAAGGCGAATGCAGAAGAATTGAACTCTCTGTACAGCATTCTTACTGACAGTAAGCCAGCAGCTGAACAGATCCCAATTACTCAAATTCTCTTGGAAGAAATTCACAAAACCCAATCACCCTAG 3789 0.4133 MKSLMGTELMRICVKEDDDFPSVPPGFESYTSFALKRVEENEKHNDKNLTSSSTSASESQSTPVGNGVQFSDTAKVSRSLRRRPWINHGKCENGSDEDFDSERHDQNFSSRPCLPKGVIRGCPDCRNCQKVIARWKPEDAHTPHLEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPRSWKPPCPLKEKSIWEGSKFATRVQRIDKLQNRNSGAKKSRIQNNMKRKRRCTRMGVDNGTGTEPNAVFCEAERFGFEPGPEFTLETFKRYADEFKLKYFRNDNLSHPSTNTAILNGISDPSVENIEGEYWRMVESPTEEIEVLYGADLETGIFGSGFPSKSSQVSVSYDQYIKSGWNLNNFARLPGSLLSYETSDISGVVVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPAKDACKLEEVMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYREQGRKTSISHDKLLLGAAREAVRAQWELALLKKNTLDNLKWQDVCGKDGLLAKAFKARVEMERVRREFLCSSSKAVKMESSFDAASERECNICFFDLHLSAAACHCSSDRYSCLDHAKQFCSCSWNSKFFLFRYDISELNVLVEALEGKLSAVYRWAKSHLGLALTSYVSVDKKPVVQGLKLHSSNSFHSSRVNMNKEMALHPTNKFIDNSQSTDAPIVDQATSANSKDQSYLKQGNSAEIVSPVSHTKELSIFNSSKPTCEIANGKVCVIKEESVICKSKPNAPVCQFNEEDSSYALSPPLAQHENEKSSHCRSDDIILLSDDEDEEMKMSDSKRKKEVPQMLAGSRNKASLCNDIEYKSLTIPLTDASVVGEKEAIMLPREDPGSCSTQLLNVKQEPHEQRGPNLPSTPVDLSFHIGLTGAESVRNIPASSRVEAGDHSLESSEVRPPLKPQPSGTIKAKSEDNHEKLGGCSTSNVADNARAINGNVSCGPNNYRQKGPRIAKVVRRINCNVEPLEFGIVFSGKSWCSSQAIFPKGFRSRVRYINILDPCSTCYYISEILDAGRGSPLFMVSLENSPNEVFIHMSATKCWDLVRERVNLEIAKQHKQGRKGLPPLHPPGSLDGFEMFGFSSPAIVQAIEALDRSRVCNEYWDSRPFSRPQGQLSQAGQTTVNGGGGTDQGVPTNQHTHIGTVAAVKSLFKKANAEELNSLYSILTDSKPAAEQIPITQILLEEIHKTQSP 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01721 1262 Pfam JmjC domain, hydroxylase 387 503 IPR003347 -
Vifa3g01721 1262 PANTHER LYSINE-SPECIFIC DEMETHYLASE 143 1126 - -
Vifa3g01721 1262 SUPERFAMILY Clavaminate synthase-like 352 548 - -
Vifa3g01721 1262 Pfam jmjN domain 149 182 IPR003349 -
Vifa3g01721 1262 Pfam C5HC2 zinc finger 610 660 IPR004198 -
Vifa3g01721 1262 MobiDBLite consensus disorder prediction 952 995 - -
Vifa3g01721 1262 Gene3D - 1034 1170 - -
Vifa3g01721 1262 MobiDBLite consensus disorder prediction 48 73 - -
Vifa3g01721 1262 Pfam F/Y rich C-terminus 1089 1172 IPR003889 GO:0005634
Vifa3g01721 1262 SMART fyrc_3 1090 1184 IPR003889 GO:0005634
Vifa3g01721 1262 FunFam Putative lysine-specific demethylase JMJ16 1032 1170 - -
Vifa3g01721 1262 ProSiteProfiles FYR domain FYRN motif profile. 1026 1084 IPR003888 GO:0005634
Vifa3g01721 1262 Gene3D Cupin 133 504 - -
Vifa3g01721 1262 MobiDBLite consensus disorder prediction 1179 1204 - -
Vifa3g01721 1262 SMART JmjN_1 147 188 IPR003349 -
Vifa3g01721 1262 Pfam F/Y-rich N-terminus 1040 1081 IPR003888 GO:0005634
Vifa3g01721 1262 ProSiteProfiles JmjN domain profile. 148 189 IPR003349 -
Vifa3g01721 1262 SMART fyrn_3 1040 1084 IPR003888 GO:0005634
Vifa3g01721 1262 SMART cupin_9 357 520 IPR003347 -
Vifa3g01721 1262 MobiDBLite consensus disorder prediction 38 73 - -
Vifa3g01721 1262 ProSiteProfiles FYR domain FYRC motif profile. 1086 1176 IPR003889 GO:0005634
Vifa3g01721 1262 ProSiteProfiles JmjC domain profile. 357 520 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01721 Vifa-Chr3 451620437 451630272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01721 5 860 JUMONJI Transcription Factor Family AT1G08620 58.190 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa3g01721 JmjC 2.2e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01721 K11446 - gmx:100800271 1976.83