Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01713 ATGAAAGGGCGGTCAAATCGCCCTCAGAATATGGACCCTCCGCCGGACGAATGGGTCGACGGTTCATGGACAGTGGACTGCATCTGCGGCGTCACCTTTGACGACGGCGAAGAGATGGTGAAGTGCGACGAGTGCGATGTGTGGGTTCACACGCGCTGTTCTCGTTACGTCAAAGGTGATGACATGTTCGCCTGTGACAAGTGTAAGGCCAAAAACAACCGTGCCGGAGATGACAACAACACTGAGGAAACTGAGGTTGCTCAATTGTTGATCGATCTTCCCACTAAGACGATCTCTCTTGAGAGAAGGAATAATAATAATAACAGAAGCAGTTCTATTTCTTCCAGAGTTGCGTCGTGTTCACGCCGTCCTTTTAGGCTTTGGACTGATATACCTATGGAGGAGAGGGTTCATGTTCAGGGTATTCCTGGTGGTGATCCTTCTCTTTTTGCTGGTAAGGCAGTGTCTTCGATTTTTGGTCCGCAGCTGTGGAAATGCACTGGTTATGTTCCTAAGAAGTTTAATTTTCAGTATAGGGAGTTTCCTTCTTGGTATGAGAATGATTCGGATAAGGGCGCACAAGAAAATGATACTGAAATTAAGGATAAGGATAATGGGGCTGGAGTTCTTTTATCATTTTCTAAAGAGACTAATAACGTGTTAGCCACATCCCCTGTCGCGGCTTTGGTGGATATGAAATCAAGCCAAGGTAAGAAGGGTTTCAAGGAAAATGGAACGGGAAAGGTTGGCAAGGATCATATGCCACGCGCGGTCCACAATGCGGACAAGAAGGAGAGGACTTTGCTTAGTCCTTCTGTTGTTCATTCAAGTAAGCGGAGGAAGGACGAATTCTCCAAGGACCGGAATGGGAAGAAGAAGCGGAGGACTTCTGACAGAGAGGAGGATGTAGATCCCAAGCGGAGGACTTCACATTCTTCTAAAGCAGCGTTTACATCAACCAGTGATGCAAAACAATTGGCATTCTATGGAGGCAGAGGTCCGAAGGTTTTCAAAGATGACATTCGAATCATAAAGAATAGAAACTTAAAAGATTTGGTGGTTCGAGATCATATCTCAAATGATTCTTTTGCCGGGGGTATCATCATGGAGGCATCAAATAACAACAACTTGACAACTACTGAGGAGTCTTCAGAAGCCTTATATCCTAACAAAACAAGACAAAGTCATTCTGCTGGAGATGTATTAGTAGAAGGGAAGACTAGCCATAAAGTTCTTGAGATGTCTTCTAAGACTGATGATGGCGTTACATCAGTTCTAAAGCAAACTAATCTTGAAAATGCCTCAGCTAAAAAGAAGGGCGGAGATTGCTTGGAGGCTAATAATGTAGATGGTACTTTTGTAAGAAGCCCTGCGAGTCCTCAGACAGAAGATCATTGTGGCTCTGCACCAGAACGTATAGGGAAGCAAGTTTCTCAAGATATTGACTGCAACCAGAATCCAAGCTCCGGGCAATGCAAAGTTAAGGTGAAGAGAGAAGAAGATGAGGATGATAAGTTTAAGCTTTCAAATTTTCATTCTTCTCCTATCAGCGGTCTTAAAAACAATGGAAAGCCATCCGATCCCACACCTGTTATTGATAAAGTCAATGATGCTGCAGTTCTCAGTTTACCTTTATGTGAAGCTAAGGTAGGCAATGTTAGCATATCATCAGAAGTACTCCCAGATAATCCTACCAACGAACTCAATGAATTGCCTGGTGATTTTTGTCGTGGAAAAGAAGAAGTGGAGGGGTCTGAAGGTTCATTGGAAACACAAAAGGGATTTTCAAAAACAAAAGATGGTCTAGGCATTTCTAAGAATCCTTCTAAATCTGAAGCACTTGAATGTCCAAGTAAAATGCTAGCTTCTGGCAGAAAGTCGTCTCCAACTTCATCCACCATGAACTCCAAATCATTGATTCATGACTTCAAATCTGAAGATACTGAAATCGCCAATCCTTTTACGAAGCATGGAGCTAAATCTGATCGTAACAATTACATGAAGAGTGAAAGTTGTATGAATGATGCTGCAATGGATGAAATTCCAAGGAAGTCTGTAAGAGAGCGTCCAAAATCTTCTTTGAATTATAATTCAAAAGGACTGCATTCAAGCCGGATTATGCAAAATTCCGTTTCAAAGCAAGTAAATCCAGATGCGAAAGATTCTGTTCACTGTTCATCAACGAAACCATCCCTGGGTCACCAGACTCCAAGTGTTTTTGGCTCTAGTGAGACTAATGCATCAATACACCATCAAAAAGGACCGAAAGTAGAAAGGCTTAATCAAACAAATACCCATCCTTCCTCGAAGTTGAACCAGAACAACACACCATCATTGAATCCTTCTCCAACATTAAATTCTTCAATGCTGAGTGATGAAGAGCTAGCTTTGCTATTGCATCAAGAATTGAATAGTTCCCCTCGTGTACCCCGGGTACCCCGTGCACGCCAAACAGGTAGCTTGCCACAGCTGACTTCTACCAGTGCTACAAACATGCTAATGAAGCGAGCATCAGTTGGAGGAAAGGATAACTATTTGGTATGTAAAAGAAAATACAAGGATGCAACTAGAGATGGGGTTTGCAGTTCTCGTGAACCAGAAGATGAAACTAAAAGGATAGAAAAGGAGAAGGTTCAATCATCATCTGATCAAAGAAAACCAGACATGGCGTATGTGGAAGATACTTCTGTAAAGGAAGAAGGAAGCCGTGCATGCGTGACAGCTGCAAACTCTATTACAGGCGATGTTGTTTCCACAGCCCCTGCCATTGAAAACAACAGTCCACCTTCCCCTCGTGAGGATTGTAATTTGTCATCAAAGAGGAACTCACCCAGGAATATATCTGATGATGATATAGCAATAGCTGGAAGGCCTGTTCATCACACCTTACCTGGCTTAATCAATGATATAATGAGCAAGGGCAGGCGCATGACATATGAGGAACTCTGTGGTGCTGTGCTACCACACTGGCCCAACTTGAGGAAACATAACGGAGAGCGATATGCATATGCAAGTCATTCCCAAGCTGTTCTTGATTGTTTGAGGAACCGGCATGAATGGGCAAGGCTGGTTGATCGTGGCCCAAAGACAACTACTACTAGGAAAAGGCGTAGTAAGCTGGATGCTGAAGAATCTGATGATAATGGATATGACAAGGGAAAAACTGCAAAAGATGCCGAAGGGAAGAACTTGGAATTGCAAAAAGAAGAGTTTCCTAAAGGTAAACGCAAAGCTCGAAAACGCAGGCGGCTGGCTCTTCAGGGAAAAGTAGTTAAGGATGTCAGAAGGAAACAAAAAACTGACTCACTTACCGGCGAAGATGTAGGCCCATTATCCAATACTAGTGAAGAGAGCCTGTTTAGTGAGGATGGAATTCAAGTTGACAGAACATGTCCAGCAGGAAGTACATCAGATGAGGCTGGAAGTGCTTAA 3432 0.4318 MKGRSNRPQNMDPPPDEWVDGSWTVDCICGVTFDDGEEMVKCDECDVWVHTRCSRYVKGDDMFACDKCKAKNNRAGDDNNTEETEVAQLLIDLPTKTISLERRNNNNNRSSSISSRVASCSRRPFRLWTDIPMEERVHVQGIPGGDPSLFAGKAVSSIFGPQLWKCTGYVPKKFNFQYREFPSWYENDSDKGAQENDTEIKDKDNGAGVLLSFSKETNNVLATSPVAALVDMKSSQGKKGFKENGTGKVGKDHMPRAVHNADKKERTLLSPSVVHSSKRRKDEFSKDRNGKKKRRTSDREEDVDPKRRTSHSSKAAFTSTSDAKQLAFYGGRGPKVFKDDIRIIKNRNLKDLVVRDHISNDSFAGGIIMEASNNNNLTTTEESSEALYPNKTRQSHSAGDVLVEGKTSHKVLEMSSKTDDGVTSVLKQTNLENASAKKKGGDCLEANNVDGTFVRSPASPQTEDHCGSAPERIGKQVSQDIDCNQNPSSGQCKVKVKREEDEDDKFKLSNFHSSPISGLKNNGKPSDPTPVIDKVNDAAVLSLPLCEAKVGNVSISSEVLPDNPTNELNELPGDFCRGKEEVEGSEGSLETQKGFSKTKDGLGISKNPSKSEALECPSKMLASGRKSSPTSSTMNSKSLIHDFKSEDTEIANPFTKHGAKSDRNNYMKSESCMNDAAMDEIPRKSVRERPKSSLNYNSKGLHSSRIMQNSVSKQVNPDAKDSVHCSSTKPSLGHQTPSVFGSSETNASIHHQKGPKVERLNQTNTHPSSKLNQNNTPSLNPSPTLNSSMLSDEELALLLHQELNSSPRVPRVPRARQTGSLPQLTSTSATNMLMKRASVGGKDNYLVCKRKYKDATRDGVCSSREPEDETKRIEKEKVQSSSDQRKPDMAYVEDTSVKEEGSRACVTAANSITGDVVSTAPAIENNSPPSPREDCNLSSKRNSPRNISDDDIAIAGRPVHHTLPGLINDIMSKGRRMTYEELCGAVLPHWPNLRKHNGERYAYASHSQAVLDCLRNRHEWARLVDRGPKTTTTRKRRSKLDAEESDDNGYDKGKTAKDAEGKNLELQKEEFPKGKRKARKRRRLALQGKVVKDVRRKQKTDSLTGEDVGPLSNTSEESLFSEDGIQVDRTCPAGSTSDEAGSA 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 917 950 - -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 758 787 - -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 235 321 - -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 1087 1103 - -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 244 311 - -
Vifa3g01713 1143 SUPERFAMILY FYVE/PHD zinc finger 16 72 IPR011011 -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 806 827 - -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 1025 1073 - -
Vifa3g01713 1143 ProSitePatterns Zinc finger PHD-type signature. 27 68 IPR019786 -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 691 750 - -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 579 637 - -
Vifa3g01713 1143 SMART PHD_3 26 69 IPR001965 -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 679 787 - -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 917 943 - -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 623 637 - -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 510 524 - -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 1105 1121 - -
Vifa3g01713 1143 PANTHER UNCHARACTERIZED 1 1135 - -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 1025 1143 - -
Vifa3g01713 1143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 76 IPR013083 -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 378 397 - -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 856 900 - -
Vifa3g01713 1143 MobiDBLite consensus disorder prediction 508 531 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01713 25 68 PHD Transcription Factor Family AT5G22260 44.681 9.17e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01713 - - gmx:100810855 1368.99