Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01705 ATGGGTTCGGGAAGCAGAAGCTATTCTGCGAATCCCAGCGATTACAAGCTTCTAGAGGAAGTAGGTTACGGTGCAAGCGCGACGGTTTATCACGCAGTTTACATCCCTTACAACGAGGAAGTAGCAGTGAAATCTCTCGATCTAGATCGATGCAACTCCAATTTCGACGATATTCGAAAGGAAGCGCAGATCATGAGCTTAATTGATCACCGAAACGTGGTGAAATCGTATTGTTCGTTTGTTGTTGATCATAAGCTTTGGGTTATTATGCCGTTCATGGCGCAGGGTTCTTGTTTGCATCTAATGAAAGCTGCTTATCCTGATGGACTTGAAGAAGATGCTATTGGATCGATTCTTAAGGAGACGCTTAAGGCGTTGGATTATCTTCATCAGCATGGGCACATTCATCGGGATGTTAAGGCTGGTAATATTTTGCTTGATACTAATGGTGAAGTCAAACTTTCTGACTTCGGTGTTTCCGCTTCTATGTTTGATACTGGTGATCGGCAGCGGTCGAGAAATACTTTCGTTGGTACTCCTTGCTGGATGGCGCCGGAGGTGCTGCAACCTGGTACTGGTTATAATTTCAAGGCTGATATTTGGTCTTTTGGAATTACTGCACTGGAGTTGGCTCATGGTCATGCACCTTTCTCTAAGTATCCTCCAATGAAGGTTTTACTCATGACCATACAGAATGCGCCTCCTGGTCTTGATTACGATCGTGATAAAAAGTTCTCGAAGTCTTTTAAGGAAATGGTTGCTATGTGCCTGGTAAAAGATCAAACAAAGAGGCCGTCCGTGGACAAGTTACTGAAACACTCCTTCTTCAAACAAGCCAAGCCTCCGGAGCTTTCTGTGAAGAAATTATTCGCTGATTTACCACCACTTTGGACTCGTGTTAAAGCCCTCCAGCTTAAAGATGCAGCTCAACTAGCACTGAAGAGAATGCCTTCTGCAGAACAAGAAGCAATATCTCAGAGTGAATATAAGCGAGGAGTTAGTGCATGGAACTTCGATGTTGAAGATTTGAAAGCTCAAGCTTCATTGGTGCAGGATGAAGATGATATTGCAGAGATAACAGAAGAAGATGAAAACAAGTTCTTCAGCTCTAACAGGGATGCAAGTGATTCTCAATCCAGCGTGGACAAGAGAAATTCAGATAACTCACAACAAGACGAGTCCACGTTACAAGTGGGTGGTAACGACGTACCACACAATGATAAAATAAATGGATTGGTTGCTGAGGCAACAGAGTCTACTTCAGAAAAGGACGTGGGAACAAGCAAAATCAAAACTCAGGCAGTTAAAGCTGGTAAAACCCAAAGTGGGCCGCTGGTGCCTGGCACAGTGCTTGGTCATTATTTACCCGAAAGAGGACGTCTATTTGAAAGCTATGCTCAATCTTGTCTGTCCATTCTGATATACATTGCTCCAAGAACAGCTGGCGTCTGTCAGATTTGGTTGTGGTGGCCGGTGGGAGCATAG 1485 0.4411 MGSGSRSYSANPSDYKLLEEVGYGASATVYHAVYIPYNEEVAVKSLDLDRCNSNFDDIRKEAQIMSLIDHRNVVKSYCSFVVDHKLWVIMPFMAQGSCLHLMKAAYPDGLEEDAIGSILKETLKALDYLHQHGHIHRDVKAGNILLDTNGEVKLSDFGVSASMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPSVDKLLKHSFFKQAKPPELSVKKLFADLPPLWTRVKALQLKDAAQLALKRMPSAEQEAISQSEYKRGVSAWNFDVEDLKAQASLVQDEDDIAEITEEDENKFFSSNRDASDSQSSVDKRNSDNSQQDESTLQVGGNDVPHNDKINGLVAEATESTSEKDVGTSKIKTQAVKAGKTQSGPLVPGTVLGHYLPERGRLFESYAQSCLSILIYIAPRTAGVCQIWLWWPVGA 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01705 494 SMART serkin_6 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01705 494 Pfam Protein kinase domain 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01705 494 ProSiteProfiles Protein kinase domain profile. 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01705 494 MobiDBLite consensus disorder prediction 371 401 - -
Vifa3g01705 494 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 96 326 - -
Vifa3g01705 494 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Vifa3g01705 494 CDD STKc_OSR1_SPAK 13 276 - -
Vifa3g01705 494 FunFam Serine/threonine-protein kinase BLUS1 4 92 - -
Vifa3g01705 494 MobiDBLite consensus disorder prediction 361 408 - -
Vifa3g01705 494 SUPERFAMILY Protein kinase-like (PK-like) 13 326 IPR011009 -
Vifa3g01705 494 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vifa3g01705 494 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 7 419 IPR047173 GO:0043539
Vifa3g01705 494 Gene3D Transferase(Phosphotransferase) domain 1 96 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01705 Vifa-Chr3 445595403 445601044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01705 8 482 MAP Kinase Kinase Kinase Kinase AT4G10730 66.528 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vifa3g01705 Pkinase 6.2e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01705 - - gmx:100811264 780.785