Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01699 ATGGAAATGACAATGTTGGTTAGTTTAAGGAACAAGCTTAAGACTCTTTGTGATTATTGTGACGCTTGGTCTTATGCCATTTTGTGGCGGTTTCATCAAACAAATCCTATGTTGTTGAATGTGGAATATTCATACTATGAGGAAGAATTAAGAGATGAGATTCAAAAAATGGTTCCACTAGTGCATTTGCTTCGTGAAGGAATTGTTGGTGAAGCTGCTTTCACAGGAAAGTATAGATGGTTGCATTCAGTTTGTTGTGAGGATGATTCTTATATGTATCAACAATTCAACTCCGGAATAATTAAGACAATTGTGGCAATACCTGTCAAAGCATTTGGAGTGGTACAGTTTGGATCAAGAAAGAAGGTTTTGGAGACAATGGATTTTTTGGATCAAGCACAAAGCTTGCTCAAGGAGATAGAGGAAATCGAGTTGGTTAACGACTCAGAAAATGCAGTTTTATCGATGGATTTTACGAACGAGGATATCAATGAATTGCTAGCTTCTTTTTCCTCTGAAAATTCATGTGTTTGGAATCTCGAATCTGCTAATGATGAAAACTGTAAAGATCTGAGAGAAGTTTTTTCTTGTGAAGAAAGGATGACATTGCTAGAATTTGAGGAAAATTCTTGTTTTGATTCATTGTCGCAACAATTTGTATCGGAAACAATGGCACAAGAAGTTCATGATTCGTGGTTGGCCTCATTGCAGAATATAGACGAAGTTTCGTTTCAAGAAAAAGTACAGAATTCAATGGATAATGCTGTGACAGAAGTTGATTTACCATCGAGTTCAAGTAGACTAAATGAAATTTCGAATAGTTTAGAGCCGATCGATATGTTGGAAGATATTTTGAAGTTCGGCTCCGTGCATGATCTTTGCGAATGGTTCACTCCTTCTCCAGAGGAAACTACTATTTGCAAAACAATGATTCAATTGGAAAAAACCCTTTCTGAACCAATAGAGTTTAAACCTATTCGCGCTGATCTTGGCCTGGCCGAGAAAGAAACATCTGTTGTAATCCATAGTTCCGAGAATGGTTTCTTGGACAACAAGAAATTTGATCAAGGTAGCGAATTGTGGGGGAATTTACTTACACCAATGGTGAATGCTGGTGGTACTGATAATACCGCCTTTTCTGAATGTGTATCGGAGTTAAATACGAGTACACCGACCGATAGTACTCGGAAGAGGCTATTTGAAGAGTTAGGAATTGAAGAGCTTTTGAGAGATGAAGCAAATCATAACAATCCATTTAGAGGATCTACTTTCGAAAATGAGTTATCGTCTAATAAAAAACAGATGGTAGAGTTTTCGCGCACGAATAGAACTCAAGTTCATTTCGCAAACCTTACCGGATCAAACTTGATGCATTCTGTTTCTGACTTGGAAGAGTCCAATAGTGTTTTAGCTAGGAAAGATACATTCTCAAAATTACAAGTTGGAATATCGGTTAATGATCGAAACAGCGTCAACATCAAGAGGGCCGTTCCAGCACACGCGAAAAGAAATGAACATCTTGCAAAGCATACCAAGAAGAAGGCTAAACCAGGGGAAAGCACTCGTCGGCCAAAAGATCGGCAGCAAATTCAAGACTGTATTAAAGAGTTGAGAGGAATCATCCCTCATGGTGGAAAGTGTAGCATCGATTCGTTGCTAGACCGCACGATAAGATACATGCTTTTCTTAGGAAGTGTGATCAAATATGCAGACAAATTACAAGAGCCTAATGAGCCAAAGCTTCTTGATCAAGCAAATGGAGTGGTTCCAAAAGACAAAAACCATGGTGCTACATGGGCATTTGAAGTATCAAACCCAACAATGTTATGTCCAATTATAGTTGAGGACATGAATCCGCCTGGCCAAATGCTTATCGAGATGCTTTGTGAGGATCAAGGTTTCTTCCTTGAGATAATCGACATAATTAGAGGTCTCGGGCTGAATATTTTGAAAGCAAAAATGAATTTAAAGAAGAATAAACTATGGGCGCGCTTTATCGTTGAGGCAAATAGACATGTGACAAGGATAGATGTGTTTTGGTCCCTTCTCCATCTTCTACAACAACCAAACTCATGTGGAATCGATTCTTCTAATAAGCATAGCAATGTTATTGATGCCAACCATAGAGATTAA 2133 0.3835 MEMTMLVSLRNKLKTLCDYCDAWSYAILWRFHQTNPMLLNVEYSYYEEELRDEIQKMVPLVHLLREGIVGEAAFTGKYRWLHSVCCEDDSYMYQQFNSGIIKTIVAIPVKAFGVVQFGSRKKVLETMDFLDQAQSLLKEIEEIELVNDSENAVLSMDFTNEDINELLASFSSENSCVWNLESANDENCKDLREVFSCEERMTLLEFEENSCFDSLSQQFVSETMAQEVHDSWLASLQNIDEVSFQEKVQNSMDNAVTEVDLPSSSSRLNEISNSLEPIDMLEDILKFGSVHDLCEWFTPSPEETTICKTMIQLEKTLSEPIEFKPIRADLGLAEKETSVVIHSSENGFLDNKKFDQGSELWGNLLTPMVNAGGTDNTAFSECVSELNTSTPTDSTRKRLFEELGIEELLRDEANHNNPFRGSTFENELSSNKKQMVEFSRTNRTQVHFANLTGSNLMHSVSDLEESNSVLARKDTFSKLQVGISVNDRNSVNIKRAVPAHAKRNEHLAKHTKKKAKPGESTRRPKDRQQIQDCIKELRGIIPHGGKCSIDSLLDRTIRYMLFLGSVIKYADKLQEPNEPKLLDQANGVVPKDKNHGATWAFEVSNPTMLCPIIVEDMNPPGQMLIEMLCEDQGFFLEIIDIIRGLGLNILKAKMNLKKNKLWARFIVEANRHVTRIDVFWSLLHLLQQPNSCGIDSSNKHSNVIDANHRD 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01699 710 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 527 569 IPR036638 GO:0046983
Vifa3g01699 710 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 5 701 IPR043561 GO:0003700|GO:0006355
Vifa3g01699 710 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 514 563 IPR011598 GO:0046983
Vifa3g01699 710 MobiDBLite consensus disorder prediction 500 528 - -
Vifa3g01699 710 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 136 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01699 Vifa-Chr3 439844015 439847052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01699 494 696 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 51.220 2.06e-60 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01699 - - cam:101509177 870.152