Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01692 ATGGCAACCAGAAGATACGCGGTTGGAAGAATGGATGAAGCAAACCATCCAGACTCCATTAGAGCTACCGTAGCTGAATTCTTCTCCACTTGCATCTTTGTCTTTGCTGGAGAAGGCTCCGCCCTTGCTCTAAGGAAGATATATAGGGATGAAGGTGCATCAGCAGGTGAACTAGTGGTACTTGCACTAGCTCATGCTTTTTCACTATTTGCCGCTGTTTCTGCTAGCGCGCATGTATCAGGTGGCCATGTGAATCCAGCTGTCACTTTTGGTGCACTTATTGGTGGTAGAATCTCAGTTCTTAAAGCTGTTTATTACTGGATTGCTCAGCTTCTTGGTTCTGTTGTAGCTTCTCTTTTATTGAGGCTTGTCACTAACAACATGAGACCACAGGCCTTCAATCTGGCGAAAAATGTTGGTGCGGGACACGGGCTTTTACTTGAGATTGCGATGACATTTGGTTTAATGTATGTTGTATATGCTACTGCCATTGATCCCAAAAGAGGCACCATTGGCTCAATTGCACCCTTAGCAATTGGACTGGTTGTTGGAGCAAATGTTCTAGCTGGTGGGCCATTTGATGGGGCATGCATGAACCCTGCTCGGGCTTTCGGGCCTGCTTTAGTGGGCTGGAGATGGGATTATCATTGGATCTTCTGGGTGGGTCCATTGATTGGAGCAGCAATAGCAGCGGTTATATATGAATATATTATGGTTCCAACTGTGCCTTCTCAGACTCATCCTCAAAATCAACCTTTGGTTGCTGAAGATTACTAG 777 0.4569 MATRRYAVGRMDEANHPDSIRATVAEFFSTCIFVFAGEGSALALRKIYRDEGASAGELVVLALAHAFSLFAAVSASAHVSGGHVNPAVTFGALIGGRISVLKAVYYWIAQLLGSVVASLLLRLVTNNMRPQAFNLAKNVGAGHGLLLEIAMTFGLMYVVYATAIDPKRGTIGSIAPLAIGLVVGANVLAGGPFDGACMNPARAFGPALVGWRWDYHWIFWVGPLIGAAIAAVIYEYIMVPTVPSQTHPQNQPLVAEDY 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01692 258 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vifa3g01692 258 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g01692 258 SUPERFAMILY Aquaporin-like 13 249 IPR023271 -
Vifa3g01692 258 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g01692 258 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g01692 258 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g01692 258 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g01692 258 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g01692 258 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g01692 258 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g01692 258 Gene3D Glycerol uptake facilitator protein. 4 246 IPR023271 -
Vifa3g01692 258 FunFam Probable aquaporin TIP1-1 4 251 - -
Vifa3g01692 258 PANTHER AQUAPORIN-8 6 240 IPR034294 -
Vifa3g01692 258 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01692 Vifa-Chr3 437480317 437481301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01692 2 258 Major Intrinsic Protein MIP AT1G73190 66.667 5.03e-117 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01692 K09873 - gmx:100814469 394.43