Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01677 ATGGCAACTAGACTCCGGTTCGAGAATTCTTGTGAAGTTGGTGTCTTCTCAAAACTTACCAATGCCTATTGTTTGGTCGCCGTTGGAGCCTCTGAAAGTTTATACAGTACATTTGAGGCTGAGTTATCAGATGTTATCCCTGTGATCAAAACCTCCATTGGTGGATCTCGCATTGTTGGTCGTCTTTGTATTGGAAACAAGAATGGACTTCTATTGCCCCATACCACCACAGACCAAGAACTCCAACATTTGAAAAACAGTCTACCTGATCATGTTCGTGTTCAGCGTATTGAAGAAAAATTATCTGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCTCTCACGCACACTGATCTCGACAGGGAAACTGAGGAGGTTCTTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTTGCCGGTAATGTTCTCGTGGGAAGTTATTGTGCTTTCTCCAACAAAGGTGGTTTGGTCCATCCTCATACTTCGATTGAAGACTTGGATGAACTTTCTACACTTCTTCAAGTTCCGTTGGTTGCGGGGACTGTTAATCGTGGTAGTGAAGTAATAGGTGCTGGCATGACAGTAAATGATTGGACAGCATTTTGTGGTTCAGACACCACGGCAACAGAACTTTCGGTGATTGAGAGTGTTTTCAAGCTGAGGGATGCGAGCAAATAA 690 0.4348 MATRLRFENSCEVGVFSKLTNAYCLVAVGASESLYSTFEAELSDVIPVIKTSIGGSRIVGRLCIGNKNGLLLPHTTTDQELQHLKNSLPDHVRVQRIEEKLSALGNCIACNDHVALTHTDLDRETEEVLADVLGVEVFRQTVAGNVLVGSYCAFSNKGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGMTVNDWTAFCGSDTTATELSVIESVFKLRDASK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01677 229 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Vifa3g01677 229 SUPERFAMILY Pentein 1 224 - -
Vifa3g01677 229 Hamap Translation initiation factor 6 [eif6]. 1 229 IPR002769 GO:0042256|GO:0043022
Vifa3g01677 229 FunFam Eukaryotic translation initiation factor 6 1 225 - -
Vifa3g01677 229 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Vifa3g01677 229 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 227 IPR002769 GO:0042256|GO:0043022
Vifa3g01677 229 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Vifa3g01677 229 NCBIfam translation initiation factor IF-6 4 224 IPR002769 GO:0042256|GO:0043022
Vifa3g01677 229 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Vifa3g01677 229 Gene3D - 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01677 Vifa-Chr3 432522574 432524789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01677 1 227 Eukaryotic Initiation Factors Gene Family AT3G55620 84.141 1.19e-150 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01677 K03264 - aew:130778167 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03845 1 593533884 593537628 Vifa3g01677 3 432522574 432524789 PCT