Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01673 ATGGCCACCAGGCGTTTGAGGGCATTTAAGCGGTGGATGAAATCCAATGGATTTGAATGGAGCAACGCATTGGAGTTTGTGGACACCCTTGAACAAGGAATATCCGTTAAAGCATTGTGTCAAATGAATGAAGGTGATGTGGTTGCGAAAATGCCAAAGCAAGCTTGTCTTACAATCAAGACTAGTGGTGCATGTGACATCATTGAAAATGCTTGTTTGGGTGGTTATTTGGGTCTTGCTGTTGCTATCATGTATGAGAGAAGTTTGGGTGAGGATTCTCCTTGGGCTGGTTACCTTCAGCTTTTGCCTCAACAAGAATCTTTGCCTTTGGTTTGGACTCTTGATGAAGTAAGCTGCCTTTTGTGTGGTACTGAGCTTCAACAGACAGTGCAAGAAGACAAAGCTCTTGTGTATGAGGACTGGAAAGAGAATATTTTACCCTTGTTGGATTCAGAACCTTCAAGGCTTAACCCGACATTCTTTGGTGTGGAACAGTACTTTGCAGCCAAAAGTCTTATTTCTTCTAGATCTTTTGAGATAGATGATTACTATGGTTTTGGCATGGTCCCCCTAGCAGACTTATTCAATCATAAAACAGGTGCAGAAGATGTGCATTTCACGGCTTTGTCTTCTAATGATGAATCTGACGACGATGCTGACGAAGGAATTGTTGATGAAGAAGCATTAGCTCAAAATTCATCTATGGATAAGACTGAGAAGGGTGTTGTTAGTAACACAGAGTATTCGGTTACTGAGGATGATACTTCAATGCTGGAGATGGTTATGATAAAAGATGTTAGCAGTGGAGCTGAGGTATTTAATACTTATGGTTTATTGGGTAATGCTGCTTTACTACATAGATATGGATTTACCGAGCAAGATAATGCCTATGATATTGTAAACATTGATATGGAGCTGGTACTTCAATGGTGTTCTTCTCTATTCTCTGACCGCCACAGCAGATCAAGCATCTCTCTTTGGAGAAGGTTAGGCTATTCCGGTGACAGCGAAAACTCAGAATATTTTGAGGTATCATTTGATGGAGAACCACAGATTGAACTCATCATTTTATTACACATCATGTTTTTACCAGTCGATGTCTACCATAAATTAGACTTATCAGTAGCAGTTGCTGGAAATCGTCACGAATCAAGTGAAAAAACCACTTTTTTGAATGGTAATATTTTTCCACATAGTAATGGGACTAATATGAGCAAGAAACCATTGATGACAAAAGAAATTTGCGCGGCTTTGTTGTCACTGGCTGATTTAAGGGAGAGTCTCTATGGTTTGAAATCAATGGAAGACGATATTGAGGCATTGGAAAGGTGTAGTTTTGTCGGAGATAGAAAGCTGCATCATTCTTTGGTTCTGCGTATCAGTGAAAGGAAGATCATTCAAAAACTCAGAAATTATGCTTCAAAGTCATGTAAGATTACTAAGCCTAGTTCTGCCCGGAAGAAGTTGAAAAGGACAGCATAG 1482 0.3981 MATRRLRAFKRWMKSNGFEWSNALEFVDTLEQGISVKALCQMNEGDVVAKMPKQACLTIKTSGACDIIENACLGGYLGLAVAIMYERSLGEDSPWAGYLQLLPQQESLPLVWTLDEVSCLLCGTELQQTVQEDKALVYEDWKENILPLLDSEPSRLNPTFFGVEQYFAAKSLISSRSFEIDDYYGFGMVPLADLFNHKTGAEDVHFTALSSNDESDDDADEGIVDEEALAQNSSMDKTEKGVVSNTEYSVTEDDTSMLEMVMIKDVSSGAEVFNTYGLLGNAALLHRYGFTEQDNAYDIVNIDMELVLQWCSSLFSDRHSRSSISLWRRLGYSGDSENSEYFEVSFDGEPQIELIILLHIMFLPVDVYHKLDLSVAVAGNRHESSEKTTFLNGNIFPHSNGTNMSKKPLMTKEICAALLSLADLRESLYGLKSMEDDIEALERCSFVGDRKLHHSLVLRISERKIIQKLRNYASKSCKITKPSSARKKLKRTA 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01673 493 PIRSF RMS1_SET 1 477 IPR011383 GO:0016279|GO:0018026
Vifa3g01673 493 Pfam SET domain 33 277 IPR001214 GO:0005515
Vifa3g01673 493 SUPERFAMILY SET domain 4 295 IPR046341 -
Vifa3g01673 493 Gene3D set domain protein methyltransferase, domain 1 2 290 - -
Vifa3g01673 493 ProSiteProfiles SET domain profile. 22 277 IPR001214 GO:0005515
Vifa3g01673 493 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 442 - -
Vifa3g01673 493 CDD SET_LSMT 23 291 - -
Vifa3g01673 493 MobiDBLite consensus disorder prediction 227 247 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01673 1 489 NAC Transcription Factor Family AT3G56570 53.571 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa3g01673 SET 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01673 - K05302 vra:106769924 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01673 3 432112387 432114657 Vifa3g01673 3 432112387 432114657 ECH