Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01671 ATGGAGAAAAACATTGTAGTTAAATATAAAGAGTGTCTTAAGAACCATGCAGCTGCTATCGGTGGCAATGCAACTGATGGATGTGGTGAGTTCATGGCTAGTGGAGATAATGACACACTAGAAGCTCTCAAGTGCTGTGCATGTAATTGCCACAGAAACTTCCACAGAAAAGAAATAGAGCCTGATTCTCAATATTATGCTCTTTCATTGATTCCTCATCATAACATCAATGCACCCTTCACGGCTCATTTATCTCCAATCAAAAGTGAATCAAATAGTCCTTCTGATCAGTCTTACTATGAGAAAGATTGTATAAAGGAGGTGGAGAACCGAACCGAAAAGACGATAAAGAAGAGGTCTAGAACCAAGTTTACTAAAGAACAAAAGGAGAAGATGTTGTGTTTTGCAGAAAAAGCTGAGTGGAAGATACAGAAGCTACAAGAATCTGTGGTGCAGATGTTTTGTCAAGAGATTGGAATCAAGAGAAGAATACTCAAAGTTTGGATGCACAATAATAAGAACACTTTTGCCAAGAGAAATGTTTCTAGTATTAGTTAA 558 0.3746 MEKNIVVKYKECLKNHAAAIGGNATDGCGEFMASGDNDTLEALKCCACNCHRNFHRKEIEPDSQYYALSLIPHHNINAPFTAHLSPIKSESNSPSDQSYYEKDCIKEVENRTEKTIKKRSRTKFTKEQKEKMLCFAEKAEWKIQKLQESVVQMFCQEIGIKRRILKVWMHNNKNTFAKRNVSSIS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01671 185 FunFam Zinc-finger homeodomain protein 2 105 178 - -
Vifa3g01671 185 Gene3D - 105 178 - -
Vifa3g01671 185 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 8 59 IPR006456 -
Vifa3g01671 185 Pfam ZF-HD protein dimerisation region 7 59 IPR006456 -
Vifa3g01671 185 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 9 58 IPR006456 -
Vifa3g01671 185 NCBIfam homeobox domain, ZF-HD class 117 174 IPR006455 -
Vifa3g01671 185 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 175 - -
Vifa3g01671 185 SUPERFAMILY Homeodomain-like 113 178 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01671 Vifa-Chr3 432087410 432087967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01671 3 180 ZF-HD Transcription Factor Family AT1G14440 50.251 1.10e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vifa3g01671 ZF-HD_dimer 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01671 - - gmx:100793926 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01671 3 432087410 432087967 Vifa3g01671 3 432087410 432087967 ECH