Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01669 ATGGTCGTTAGCGGAGGCAAGTCCCTGAAGCGCGTGAAGAAGAGAGTCACCGCGGATCACCACGATTTCTTCTCCTTCCCCTCACAATCCCTCGCCGCCTCCGAAAGCTTCTCCATCGGTCCATTCCGCTCCAACGTCCGCTCATTTCTCACGAAATACGCGCTTCTCCCGCCGCCGTCGGCGCTGTTCCCCCACCTCCTGACGTGGCAGATCCTCTTCCGTGTTGGCGAGGTCACCGAAGGCTCTGAATCTGGACCGGCGGTGGTGTGCCTCGACGTCGTGGAAGAGGATGTGGCCAGATCTAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCGGCAACCCAGTGTGCGGGAAACGCTACCATTTTATAATCAAAGCTGACGGAGGATCAATTGGTGGATACCACAAACCGTGTATGTGTTGTGGAGACAGTTTGCATTTGTCGGAATCCAAGTGTAAGTCTTGCAATCATGTAACAACCAGTGATGATGTTGAAGAATGGGTGTACCACCAACTAGAGAACACAAGTCATCTTTTACATGGTGTAGTCCATGCAAATGGTTACGGTCACCTTCTCAGGGTTAATGGCAGAGAAGGGGGATCTAGATTTCTTTCTGGTTGCCATATTATGGATTTCTGGGATCGCCTATGCAAGACACTTGGAGTTAGAAAAGTCAGTGTGATGGATGTTTCAAAGAAATATGGGCTCGAGTATCGCTTGCTCCATGCCATTATGAAGAGACATTCGTGGTATGGTGAGTGGGGATATAATTTTGGCTCTGGTAGCTATTGTCTCACCAAGGAAGCATATAAGTCTGCTGTGGACAACCTGTCCAATCTACCCCTGTCCATTTTTCTCTCCCATGAACAAAAGCCCCACTCACGTGTGCAGGATATGATCTTGTATTACCAGTCTTTGTCAGATCATGAGCTTGTAAATATGAGAGATCTATTTTGTTTTTTGATGGGTTTGATGCACGGTGCTCGCAAGAATGCCTCTAAGTCTGGTGACATAACCTGCAAGAAGCGTCGGTTTGATGCTTCTGGATTATCAAGTTCTTGGGGGAAGAGTGACATTGAACGTGTGGAGGAAGCCATGCTCAGAGTGCTGCGTGCAGTGTCTGGGTCTAATTGGGTGAGCCGCCGTGCTCTTAGGGGCGCTGTTTGCAAGGTGGCGTCTCCAGAGCTTCTTGATTATTGCCTTGCTGAATTGGGAGGGAAAGTGGTGTATGGTGGCGTTGTTAACAGCAGATGCAATCCTCAAACTGGAGTTGATGAATTCAGAATTGATGCGACAAGCTTTGATGGATTTATGGCCAACAATAATTCTTCAGGCTCAAAGTGCCCATCTGAAGAAAATCTCCTCCAATGCTTGAGATATTTATACGAGTCCTTGCTTCATCCACGGATGATGCTAAACTATGTCGATGAAGAGACAAGAACGCTTGCAATGAGCTCAGCTCAGAAACTTCTTGACTGCAAGCAATTAATAAAAGATTATTGTACTGAGATGTTGCCAGTGTCAGATTTGTATAAAATACGCATCTCATGTCAGGTTGAGCTAGTTGATCAACCAGAAGATTCCGCAGCTGGAACTCCTCCTGAAATAATTGTGCTGCCTACAAATGCGACAATATCAGACCTTAAGATTGAAGCAGCAAATGTTTTTCAAGACGTATATCTAATGTTTAGAAGATTTCAAGTTGACGAACTACTTGGCTACAGCGGTGTAGATGATTCCACCCAGGTCAAGCACTTATTAAAACCAAATGAAGTGGTTTGCATTCGAGGAAGATGCTCCGGGAAGAATGGGTTGAGCAAGTTTCGAATGGAACGGGGACTTGAGAGGTGGACTGTGGAGTGCAGCTGTGGGGCTAAGGATGATGATGGAGAGAGAATGATGGCTTGTGATACATGTGGAGTATGGCGGCACACCAGGTGTTCTGGCATTCCTGATACTGCTCCTGTTCCAGCACGTTTTGTTTGCAAGAGATGCCAAAATTGTGACTCAAAGCCTATATCTGGTGGCCACTTGAAAGAAGAGACTGTGACTAGTGTTAGTACCCCTAGAAGTAGTTGCTTTGGCAGTGGTGTGCCAGTGTTTCCTGATGTTCGTTAG 2130 0.4695 MVVSGGKSLKRVKKRVTADHHDFFSFPSQSLAASESFSIGPFRSNVRSFLTKYALLPPPSALFPHLLTWQILFRVGEVTEGSESGPAVVCLDVVEEDVARSRSVYCDQCRVFGWSGNPVCGKRYHFIIKADGGSIGGYHKPCMCCGDSLHLSESKCKSCNHVTTSDDVEEWVYHQLENTSHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKRHSWYGEWGYNFGSGSYCLTKEAYKSAVDNLSNLPLSIFLSHEQKPHSRVQDMILYYQSLSDHELVNMRDLFCFLMGLMHGARKNASKSGDITCKKRRFDASGLSSSWGKSDIERVEEAMLRVLRAVSGSNWVSRRALRGAVCKVASPELLDYCLAELGGKVVYGGVVNSRCNPQTGVDEFRIDATSFDGFMANNNSSGSKCPSEENLLQCLRYLYESLLHPRMMLNYVDEETRTLAMSSAQKLLDCKQLIKDYCTEMLPVSDLYKIRISCQVELVDQPEDSAAGTPPEIIVLPTNATISDLKIEAANVFQDVYLMFRRFQVDELLGYSGVDDSTQVKHLLKPNEVVCIRGRCSGKNGLSKFRMERGLERWTVECSCGAKDDDGERMMACDTCGVWRHTRCSGIPDTAPVPARFVCKRCQNCDSKPISGGHLKEETVTSVSTPRSSCFGSGVPVFPDVR 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01669 709 CDD PHD_MMD1_like 624 669 - -
Vifa3g01669 709 SUPERFAMILY FYVE/PHD zinc finger 613 671 IPR011011 -
Vifa3g01669 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 675 IPR013083 -
Vifa3g01669 709 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 15 679 - -
Vifa3g01669 709 SMART PHD_3 624 670 IPR001965 -
Vifa3g01669 709 Pfam PHD-finger 625 672 IPR019787 -
Vifa3g01669 709 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Vifa3g01669 709 ProSiteProfiles Zinc finger PHD-type profile. 622 672 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01669 Vifa-Chr3 431275674 431281345 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01669 86 669 PHD Transcription Factor Family AT5G22260 29.952 1.61e-81 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa3g01669 PHD 1.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01669 K26271 - gmx:100818189 1127.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01669 3 431275674 431281345 Vifa3g01669 3 431275674 431281345 ECH