Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01657 ATGGAGGAAAGAGAGAATTTCGGTGCTGTGAATGCAGTGGCGAGTAATCAAGTTCCAGTGAGCTTCGTTGCAGCTCCCAGGATTGAAAACAATTTGGATTTTTCCATGGCAACGGTGCCGGTGTCGATGCCGGTGACGGCGGTGAAGAAGAAGAGGGGGAGGCCAAGGAAGTATGGGCCAGATGGGAAGCCTGCTCCCGGGGCTGTGACCGCGCTTTCGCCGATGCCGATTTCCTCGTCGATTCCGTTGACTGGAGAGTTCTCTGGTTGGAAAAGGGGTGGAGGGAAGCCTGTTGAATCTATCAAGAAATCATCTTTTAAGTTTGATTTTGAAAGTCCACCAGGACAAGGAGTCAGTGTAAGTGTAGGTGCAGGTGCAGGTGCAAGTGCAGGTGAGGGAATTGCAAACGCAGTAGGTGCCAATTTCATGGCTTATATGCTTACAGTAAATTCTGGCGAGGATGTCACCATGAAAATCATGTCCTCCCAACAAGTATCGCGTGCTATATGCATTCTCTCTGCAACTGGCACAATTTCAAATGTTACACTTCGTCAATCGACTTCTTCAGGGGGTACTTTAACATATGAGGGGCCGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAATTACAAGAAGCAGATCTGGTGGGATGAGCGTCTCTTTGGCAGGTCCGGACGGTCGAGTATTAGGTGGCGGGCTCGCTGGTTTACTTATAGCTTCTGGTCCTGTGCAGGTTGTTGTGGGAAGTTTTCTTCCTAACCACCATCTAGAGGACAAAAGCAAGAAGCAGAGGGTGGGGCATAACATATCAACCATTACACATAATCACCCTCCTCCACATGCTAATCACCATAATCATATGTCTAATGAAGTAAGTTTCGGTGGTGTGAAACCTATTATGACACCTGCTGCATTTCAAGAAGAGAAAATTGTTTCTTTCAACAACAAGAACAATGCTCAAGACTCTAGGAACAATTCATCTGCGGATGACAGAGATCCTTTACCTGAAAAGGATTCTAATCATAGCCAATCAAATGCTTGA 1059 0.4646 MEERENFGAVNAVASNQVPVSFVAAPRIENNLDFSMATVPVSMPVTAVKKKRGRPRKYGPDGKPAPGAVTALSPMPISSSIPLTGEFSGWKRGGGKPVESIKKSSFKFDFESPPGQGVSVSVGAGAGASAGEGIANAVGANFMAYMLTVNSGEDVTMKIMSSQQVSRAICILSATGTISNVTLRQSTSSGGTLTYEGPFEILSLSGSFMPTENGITRSRSGGMSVSLAGPDGRVLGGGLAGLLIASGPVQVVVGSFLPNHHLEDKSKKQRVGHNISTITHNHPPPHANHHNHMSNEVSFGGVKPIMTPAAFQEEKIVSFNNKNNAQDSRNNSSADDRDPLPEKDSNHSQSNA 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01657 352 MobiDBLite consensus disorder prediction 317 352 - -
Vifa3g01657 352 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 259 - -
Vifa3g01657 352 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 336 IPR039605 GO:0003680
Vifa3g01657 352 Gene3D - 144 279 - -
Vifa3g01657 352 ProSiteProfiles PPC domain profile profile. 139 279 IPR005175 -
Vifa3g01657 352 MobiDBLite consensus disorder prediction 47 68 - -
Vifa3g01657 352 MobiDBLite consensus disorder prediction 262 301 - -
Vifa3g01657 352 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 256 IPR005175 -
Vifa3g01657 352 CDD DUF296 145 256 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01657 Vifa-Chr3 428297436 428300368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01657 48 269 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 60.088 1.06e-78 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01657 - - gmx:100776862 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03972 1 610943448 610946139 Vifa3g01657 3 428297436 428300368 ECH
Vifa3g01657 3 428297436 428300368 Vifa3g01657 3 428297436 428300368 ECH
Vifa1g03972 1 610943448 610946139 Vifa3g01657 3 428297436 428300368 PCT