Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01642 ATGGTAGGATTGGAACTCATACCAATAGGTACAATTCTAACTGTGGTAACAAACCAAGTATTGAGAACAGCTCATGCTGCAGCCGATGTTCTTATCGGTAAAGAGAGTTTCAAGGCACTTTCGAAATATCTATTCGATATCGAGCCAGTACTAAAGGAGTTACAGCGTCAAGAACTGAATGATTCTCAACCTGCAAGATTTGCTCTAGAGTCCCTCGAAGCAGATGTTAAAAGAGCCAATACTTTGATCGCGAAATACAAGAATCGCGGCCGTTTCTACTTACTAGTTAAGTGTCGTTCGATAGTCGAGGAAGTGGAGCAAGTCACAAGGGATATTGGAAGGTCTTTAGCTGCACTGTCGATTGCGAATACTGAAGTGCTGTCGAGGATTTCTGATCAGGTTGATAGATTACAAGATGAGATGCAGAGAGTTGAGTTTGAGGCTTCGCAATCTCAGCTTGAGATTGTTGATAAGCTGAACCAAGGTTTAAGAGATCAGAAACAAGATCAGGCTTTCGCGAATGATATACTTGAGGAGATTGCAATGGCGGTTGGAGTTCCCATGGAACCGTCTGAGATAGGAAAGGAGTTGGCCAGTATTAGGAAGGAAAAAGAAGAGGCTGCTAATAGGAAAGAAAAGGCTGAATTCGTTATCTTGGAGCAGATCATTAAGTTACTCTCTAGGGCCGATGCAGCCAGGGATTATGAAGAAGTTAAGATTCAATACTTTGAAAGGGTACAAGTGATAGAAAGATATGATTCGAGGGAAAAATATATCCTACCGCTTAATTCGTTTCTTTGCTGTATAACGGGAGCGGTTATGGTTGATCCTGTTAGCCTTAACACAGGTACAACATGTGAGAGATCAGCCATTGAAGGTTGGTTTTACGATGGAAACAGAATGGATCCGAAAACGAAAGAGGTTCTTGATGATACTAGCTTGAAGTCTAATATTCCGATAAGACAATCGATTGAAGAGTGGAGAGAACTTAATTACTGTCTTCTGATAAGGTCTATCAGGGAGAATTTGTTATCGAATTCTAATCTGCAAGAGTCCTTAAGCCAAATGCAGGCTCTAATAGCTGAGAATTCTATTAACAAGGATTGGATCTCTATTGGAGAGCTTACTGATAATGTCATCTCGATCCTCGGGAACTCTAATGACAGAGAAGTGAAGATGAAGATTTTGATCACTTTGAAGGTTGCTGTAGAGGGGCATGCAAGAAACAAGGAGAAATTGGCTGAATCACAAGGATGGGATCATATCATTTTGTGCTTAGAAAGCAACTCTAACATTTCGAAGGCAGCAATTGATTTGTTATATGAGTTGCTTCAAGACCGATCTGGTTGGAATCAATGTTTTTGCAAAAAACTTTCTGAGAACGTCACAGCAGTTCCTTTCCTTGTAACTCTTGTAAAGGACCCTGGAAATGATTCAACCGAGGTTGCGCAGAAGATTTTAAAGGAGCTTTTTGAAATAAATGAAAGCAGCATTATCACTGCTGCTAATTGTGGCTGGCATAAGCCACTAGCTGATCGCATGATTCGAGGACCGGATTCAAGAATGTCGATGGCAAAAGTGATAGTTAACTTGGAGTTGGATGATTTAAACTTGATACAACTTGGCAAGGAAGGAGTTATAACTCCTTTGATCGAAATGCTGTCCGGAAGTATCGAATCGAAAGACCTTTCATTATCGGCCCTTGTTAAGTTAGCCGGATCTCATGCCAACAAGGGAGTTATTGCTTCCTCGGGAGGTGTTCCTCTTATTCTAGACTTATTGTTCTCTCCTAGGACAAGGGCTTTCATTACCATTAAATGCTCCGAAATTCTTGAGAAACTTTCTTCTTCCGATGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAACTTGAGTTAGATTCCATCATCACCAATTTGCTACATTTGCAACAGAGTTCGAATTCAGGCCCCAACCTCCGTAAGCCCATGCTACGCGCTCTCCTCGGCATTTGCAAATTTGAGACTGGTTTCGTGAAGAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTTCCACTTCTTGATGATCCTGACTCGGAAATCCGAGAGACTGCGATAAACCTGCTCTTTCTTTTCTCACAGCATGAACCAGAAGGAGTAGTTGAATACCTCTTCAAGCCTAGGAGGCTAGAAGCTTTGATTGGATTTCTTGAGAACGATGACAACGATAACGTACAAATGGCTGCAGCCGGTTTACTAGCCAACCTACCGAAATCAGAAAGAGAACTAACATCAAAGTTGATTGAAATGGGAGGACTTGATGCAATCATAAGCATTTTAAAAACTGGCAAAATGGAAGCAAAAGAACACGCTCTCAGCGCACTCTTCAGGTTCACGGATCCTACAAACATCGAGTCACAACGTGATTTAGTTAAACGCGGAATATATCCTTTGCTTGTAAACTTTCTCAACACTGGTTCAATCACTGCAAAGGCAATAGCAGCAGCTTTCATCGGCGATCTTTCTATGAGCACTCCAAAGCTAACAGATGTTTCAAAACCAACCGGCTGCTGGTTTTGCAGACCATCACGTATTCCTTTATGCCCTGCGCACGACAGCATATGCAGCGCGACAACCACATTCTGTCTTTTGGAAGCAGATGCTTTACCTGGTTTGATAAAGCTGTTACAAGGAGAGGTTCATGCAACTGCTTTTGAAGCAATACAAACACTTTCTACTTTAGTTTTGGAGGAGTTTCCACATCGAGGTGCTCGTTTGTTGCATGAGTCAAATGCAATGAGACCTTTATTGGAGATTTTGAATTGGGGTAGTGAGTCACTTAAGGCAGAAGCTTTAGGACTTTTGGAGAAGGTTTTTGTGTCAAAGGAAATGGTGGAATACTATGGAGTGACGGCGAGATCGCGACTAGTTTGCTTGACTGGAAATAATATATATGGAGATGGTCATCTCAGAAGGAAAGCTGCTAAGGTATTGTCATTGCTTGAACGTTATTCTAAGTCTTCATCATCTGCTATTTCTGGAGTTTTGGAGTGA 3042 0.4152 MVGLELIPIGTILTVVTNQVLRTAHAAADVLIGKESFKALSKYLFDIEPVLKELQRQELNDSQPARFALESLEADVKRANTLIAKYKNRGRFYLLVKCRSIVEEVEQVTRDIGRSLAALSIANTEVLSRISDQVDRLQDEMQRVEFEASQSQLEIVDKLNQGLRDQKQDQAFANDILEEIAMAVGVPMEPSEIGKELASIRKEKEEAANRKEKAEFVILEQIIKLLSRADAARDYEEVKIQYFERVQVIERYDSREKYILPLNSFLCCITGAVMVDPVSLNTGTTCERSAIEGWFYDGNRMDPKTKEVLDDTSLKSNIPIRQSIEEWRELNYCLLIRSIRENLLSNSNLQESLSQMQALIAENSINKDWISIGELTDNVISILGNSNDREVKMKILITLKVAVEGHARNKEKLAESQGWDHIILCLESNSNISKAAIDLLYELLQDRSGWNQCFCKKLSENVTAVPFLVTLVKDPGNDSTEVAQKILKELFEINESSIITAANCGWHKPLADRMIRGPDSRMSMAKVIVNLELDDLNLIQLGKEGVITPLIEMLSGSIESKDLSLSALVKLAGSHANKGVIASSGGVPLILDLLFSPRTRAFITIKCSEILEKLSSSDDGIDFFVDGEGKQLELDSIITNLLHLQQSSNSGPNLRKPMLRALLGICKFETGFVKKAILAANGVSLILPLLDDPDSEIRETAINLLFLFSQHEPEGVVEYLFKPRRLEALIGFLENDDNDNVQMAAAGLLANLPKSERELTSKLIEMGGLDAIISILKTGKMEAKEHALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSITAKAIAAAFIGDLSMSTPKLTDVSKPTGCWFCRPSRIPLCPAHDSICSATTTFCLLEADALPGLIKLLQGEVHATAFEAIQTLSTLVLEEFPHRGARLLHESNAMRPLLEILNWGSESLKAEALGLLEKVFVSKEMVEYYGVTARSRLVCLTGNNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVLE 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01642 1013 Coils Coil 69 89 - -
Vifa3g01642 1013 Gene3D - 8 123 IPR036537 GO:0007166
Vifa3g01642 1013 Gene3D - 340 513 IPR011989 -
Vifa3g01642 1013 Gene3D - 516 848 IPR011989 -
Vifa3g01642 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Vifa3g01642 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Vifa3g01642 1013 SMART arm_5 799 839 IPR000225 GO:0005515
Vifa3g01642 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Vifa3g01642 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Vifa3g01642 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Vifa3g01642 1013 SMART arm_5 712 754 IPR000225 GO:0005515
Vifa3g01642 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Vifa3g01642 1013 SMART arm_5 916 956 IPR000225 GO:0005515
Vifa3g01642 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1005 - -
Vifa3g01642 1013 SUPERFAMILY RING/U-box 249 330 - -
Vifa3g01642 1013 SUPERFAMILY ARM repeat 378 716 IPR016024 -
Vifa3g01642 1013 Coils Coil 127 154 - -
Vifa3g01642 1013 CDD MLKL_NTD 34 145 - -
Vifa3g01642 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 333 IPR013083 -
Vifa3g01642 1013 Gene3D - 866 1005 IPR011989 -
Vifa3g01642 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Vifa3g01642 1013 SUPERFAMILY ARM repeat 634 1001 IPR016024 -
Vifa3g01642 1013 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Vifa3g01642 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Vifa3g01642 1013 Coils Coil 197 217 - -
Vifa3g01642 1013 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 724 752 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01642 Vifa-Chr3 424683089 424686318 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01642 264 968 U-box Gene Family AT1G20780 26.923 1.46e-40 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01642 - - gmx:100783638 1571.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01642 3 424683089 424686318 Vifa3g01642 3 424683089 424686318 ECH