Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01636 ATGGAAAACAGTGCTGCATATGTGAATGAACTTAACATGAAGGATACTGAGCTAAGACTAGGACTTCCAGGAACAGAAGAAAATGAGAATGAAAAAGCACTTTCCGTTAAAGTTTCCAACAAAAGATCATTGGTTGAAACTTCTAAGGACACTGCCAGTGGTTCAAAAACATCTGAATCTGATGCAGCACCTCCTTCTAAGACAAAAATAGTGGGGTGGCCACCAATAAGATCTTACAGGAAGAACAGTTTGCAAGAGGCTGATGCTTCTGCGATTTACGTGAAAGTGAGTTTGGATGGAGCTCCTTACCTTAGAAAGATTGATTTGAGGATCTATGGAGGTTATGCACAGCTTCTCAAAGCTTTAGAAAACATGTTCAAGTTAACTATTGGTGACTACTCAGAAAAAGAAGGTTATAAAGGATCTGAATATGAACCTACATATGAAGATAAAGATGGTGATTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTTACATCTTGCAAGAGACTAAGAATAATGAAAGGAACAGAAGCTAGAGGTGTTTGA 555 0.3838 MENSAAYVNELNMKDTELRLGLPGTEENENEKALSVKVSNKRSLVETSKDTASGSKTSESDAAPPSKTKIVGWPPIRSYRKNSLQEADASAIYVKVSLDGAPYLRKIDLRIYGGYAQLLKALENMFKLTIGDYSEKEGYKGSEYEPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEARGV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01636 184 ProSiteProfiles PB1 domain profile. 91 178 IPR000270 GO:0005515
Vifa3g01636 184 MobiDBLite consensus disorder prediction 40 64 - -
Vifa3g01636 184 FunFam Auxin-responsive protein 86 184 - -
Vifa3g01636 184 Pfam AUX/IAA family 48 183 IPR033389 -
Vifa3g01636 184 Gene3D - 85 184 - -
Vifa3g01636 184 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 181 IPR003311 GO:0005634|GO:0006355
Vifa3g01636 184 SUPERFAMILY CAD & PB1 domains 82 177 - -
Vifa3g01636 184 MobiDBLite consensus disorder prediction 20 36 - -
Vifa3g01636 184 MobiDBLite consensus disorder prediction 16 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01636 Vifa-Chr3 423664003 423664773 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01636 95 182 B3 DNA Binding Superfamily AT4G23980 32.955 9.75e-10 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa3g01636 AUX_IAA 2e-50 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01636 K14484 - gmx:100527777 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01636 3 423664003 423664773 Vifa3g01636 3 423664003 423664773 ECH