Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01634 ATGGCTAGTTTGATTGGAAAGGAGAATGGTTTGAACATGAAGGAGACTGAGCTTTGTCTTGGTTTGCCTGGCGGCGGTGGCGGTGGCAGTGGCGGCGAGGTTGAAACTCCTAGAGCTGCTGGAAAGAGAGGTTTCTCTGAAACAGTTGATCTGAAGCTCAATCTTCAAACCAAGGAAGATCTGAATGAGAATCTGAAGAATGTTTCAAAGGAGAAGAGCATGCTTAAGGACCCTGCCAAACCACCAGCTAAGACTCAAGTAGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATGGCACAGAAAGTTAACAATACTGAGGAGAACGAGAAGACAACAAGTAGCACTACTGCTGGTGCATTTGTTAAGGTTTCCATGGATGGAGCACCTTACCTTCGTAAGGTCGACTTGACAATGTACAAAACCTACAAAGATTTATCTGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCACTGGTAACTATGGGGCCCATGGAATGATAGACTTCATGAATGAAAGCAAGTTGATGGATCTTCTTAACAGTTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGCGACTGGATGCTCGTGGGAGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTCTCCGCATAATGAAAGGATCAGAAGCAATTGGGCTTGCACCAAGAGCAATGGAGAAATGCAAAAACAGAAGCTAA 720 0.45 MASLIGKENGLNMKETELCLGLPGGGGGGSGGEVETPRAAGKRGFSETVDLKLNLQTKEDLNENLKNVSKEKSMLKDPAKPPAKTQVVGWPPVRSYRKNMMAQKVNNTEENEKTTSSTTAGAFVKVSMDGAPYLRKVDLTMYKTYKDLSDALAKMFSSFTTGNYGAHGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01634 239 Gene3D - 115 233 - -
Vifa3g01634 239 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 226 IPR003311 GO:0005634|GO:0006355
Vifa3g01634 239 FunFam Auxin-responsive protein 116 231 - -
Vifa3g01634 239 Pfam AUX/IAA family 39 230 IPR033389 -
Vifa3g01634 239 SUPERFAMILY CAD & PB1 domains 117 220 - -
Vifa3g01634 239 Coils Coil 51 71 - -
Vifa3g01634 239 MobiDBLite consensus disorder prediction 22 43 - -
Vifa3g01634 239 ProSiteProfiles PB1 domain profile. 121 221 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01634 Vifa-Chr3 421834833 421836843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01634 113 229 B3 DNA Binding Superfamily AT4G23980 29.915 1.93e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vifa3g01634 AUX_IAA 5.7e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01634 K14484 - gmx:100810762 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01634 3 421834833 421836843 Vifa3g01634 3 421834833 421836843 ECH