Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01627 ATGGAGAAATCAGGTGGTATAGGAGTAGTTTTGTCGGCGAAAGAGGCATTTGAGAAGCTAGAGAAAGTTGGAGAAGGGACTTATGGGAAGGTGTACAGAGCAAGAGAGAAAGCTACTGGGAAGATCGTTGCGTTGAAGAAGACTCGTCTTCATGAGGACGATGAAGGGGTTCCTCCGACTACTCTTCGTGAGGTTTCCATTTTGCGAATGCTCTCTCGCGATCCACATGTTGTTAGGTTATTGGATGTGAAACAAGGACAGAATAAGGAAGGGAAGACTGTGCTCTACTTGGTTTTTGAGTACATGGATACTGATCTCAAGAAATTCATCCGGACTTTTCGCCAAACTGGAGAAAACATCCCATCCCCAACCATCAAAAGCTTGATGTACCAACTTTGCAAGGGCGTTGCTTTCTGCCACGGCCATGGAATCTTGCACAGGGACTTGAAACCTCACAATCTGTTGATGGACCGGAAAACAACTATGCTCAAAATTGCTGATCTTGGACTTGCCAGAGCATTTACTGTGCCACTTAAGAAGTACACTCATGAGATTCTAACTCTGTGGTACAGAGCTCCTGAAGTCCTTTTGGGGGCTACCCATTACTCAATGGCTGTGGATATATGGTCTGTTGCGTGCATATTCGTTGAACTTGTCACCAAGCAAGCACTCTTTCCTGGTGATTCTGAGCTGCAACAACTCCTCCATATATTCAGGCTGTTGGGGACTCCTAATGAAGAGGTGTGGCCAGGTGTTAGTAAACTAATGAACTGGCATGAGTACCCTCAGTGGAGCCCTCAAAGTCTTGCAAAGGCTGTTCCCAATTTGGATGAGGCTGGACTGGATCTACTCTCTCAAATGCTTAAGTATGAACCTTCCAAGAGGATTTCGGCCAAGAAAGCTATGGAGCACCCTTACTTTGATGACCTGAACAAAACCAATCTTTAG 948 0.4557 MEKSGGIGVVLSAKEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLLDVKQGQNKEGKTVLYLVFEYMDTDLKKFIRTFRQTGENIPSPTIKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTTMLKIADLGLARAFTVPLKKYTHEILTLWYRAPEVLLGATHYSMAVDIWSVACIFVELVTKQALFPGDSELQQLLHIFRLLGTPNEEVWPGVSKLMNWHEYPQWSPQSLAKAVPNLDEAGLDLLSQMLKYEPSKRISAKKAMEHPYFDDLNKTNL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01627 315 Gene3D Transferase(Phosphotransferase) domain 1 105 314 - -
Vifa3g01627 315 PANTHER CELL DIVISION PROTEIN KINASE 15 308 - -
Vifa3g01627 315 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Vifa3g01627 315 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vifa3g01627 315 FunFam Cyclin-dependent kinase B2,2 13 103 - -
Vifa3g01627 315 Pfam Protein kinase domain 17 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01627 315 Gene3D Phosphorylase Kinase; domain 1 12 103 - -
Vifa3g01627 315 FunFam Cyclin-dependent kinase 2 105 314 - -
Vifa3g01627 315 SMART serkin_6 17 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01627 315 SUPERFAMILY Protein kinase-like (PK-like) 14 311 IPR011009 -
Vifa3g01627 315 ProSiteProfiles Protein kinase domain profile. 17 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01627 Vifa-Chr3 420208097 420209789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01627 4 315 Core Cell Cycle Gene Families AT1G20930 84.026 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vifa3g01627 Pkinase 5.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01627 K07760 - gmx:547738 587.415