Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01622 ATGGCACCCACACCTTCTTCCAAGCCAATTCATTCCACCCAACTGAGGACTCCGAATTCAAAGCATCGCTTAAACTTCAGTGGCTTCAAATCACCGCATCCACACCCATCTCCGAATCCCAATTTTGCTTCCAACAAAGAATCACCACCTGAACACCCGATTGAAGTTATTGCTAGAATCCGTGACTACCCGGATCGAAAAGATAAGCCTTTATCGGTTCTTCAGGCGAGTTCTAACTCGAGATCGATTAGGGTTCGCGCGGATTTTGGGTATAGGGATTTTACCCTTGATGGGGTGTCTCTGTCTGAGGAAGAGGAATTGGATCTGTTTTACAAGAAGTTTGTGGAATCGAGGATCAATGGAGTTAAATTGGGGGACAAATGCACCATTATGATGTATGGGCCGACTGGTTCTGGCAAGAGTCACACCATGTTTGGGTGTGCAAAGCAGGCTGGGATTGTGTATAAGGCTTTGAGGGATATTCTTGGAGATGGCGATACAGATTCTGAGATTAGTGGAGATGGAAGTGATGGTGACTCTATAGGGTTGAGAACTTTTGTTCAGGTTACTGTTTTGGAGATTTATAATGAGGAGATTTATGATCTCTTAACTACCAATGGAGGAGGTGGTGGAGGATTTGGATTCGGTTGGTCTAAGAGCAATGCTTCAAAGGTCAAACTTGAGGTGATGGGGAAAAAGGCTAAGAATGCAACCTACATATCTGGAAATGAAGCAGGGAAGATTTCGAAGGAAATTCAGAAAGTGGAAAAGCGAAGGATTGTTAAAAGCACACTTTGTAATGACAGGAGTTCTAGAAGTCACTGCATGGTAATACTTGATGTCCCGACAGTGGGAGGACGGCTCATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTCGAGGCGAAAATGCAGACTGCAAAAATTAATCAAGGTAATATAGCACTGAAGAGAGTGGTTGAATCTATTGCAAATGGCGATTCACATGTGCCTTTTAGGGACAGTAAACTTACCATGCTTCTGCAGGATTCCTTTGAAGATGATAAGTCGAAAATTCTAATGATACTATGTGCGAGTCCTGATCCTAAGGAGATACACAAGACAATCTCGACACTAGAATATGGAGCCAAAGCAAAATGTATAGTTCGTGGTCCTCATAGTCCGGTTAAGGAGGAGGACTCTTCTTCTACTGTCATCTTGGGATCAAGAATCGCTGCAATGGATGAGTTTATTATGAAACTACAAATGGAAAACAAGCTTAAAGAGAAAGAGAGGAATGAAGCGCACAAGAAGCTAATGAAGAAAGAAGAAGAAATTGCTGAGTTAAGAGCTAAAGTGGAAACAGCTCCTGCTGCAAGTGAGGAGGAGATTAACCTAAAGGTAAATGAACGAACCCGTCTTTTGAGACAGGAGTTGGAAAAGAAGTTGGAAGAGTGTCAAAGAATGACTAATGATTTTGTCGAGCTAGAGAGGAAGAGAATGGAAGAGAGGATATTGCAGCAGCAGGAGGAAGTTGAGATTCTGAGAAAGAGACTGGAAGAAATTGAGTTGCAGCTGAGTTCTTCTAAGCAAGAGCGTAAAGATGAAAACGGATCGAAAGAGATGGAGCCAAGTGGGTTTATGAGAAAACTACTGAGTGTTTACAAAAGTGAGGATGATCTTGCAATGGTGAAATCAATGGATCTGGACATGGATGATCAAGAGCCGTTCCTTGCACGCGAAGTTATCGTTGGCATGCAAGGCATTTCACCAATTCAACCCTGTTCAAATACTTTGAATGTTGATCAAGAATATGCACCAAACTTTGGTCCAAAAGCATGTCTAAGTACAGTATATGAAGAAGAAGGAGAGGGAGAGGGAGAGCAAGATCATGAGGATAGTGTAGAAGAAGATGAGGAAGTGGAGAAAGAAGTGATAGAGGAAAAGAGGGTATGTAGTGTAGGAAAGAGTCCAAAGAAAGAGGATTTTTCTGTGGCCGACAAGGAAAACAATGGTTCGAATAGAATGTTGAGAATTCACAACATATTCACACTTTGTGGAAACCAAAGGGAACTCTCGCAATTTGGAACACCAGTTCCTACAAAATATTCTCCTGTCAAATCAAGTGAGAAGAAAGATTCTGTTTTAAGAATCTCCAACAAAGAGAACCTGGAACAGAATGTTGTGGCAAATTAG 2196 0.4199 MAPTPSSKPIHSTQLRTPNSKHRLNFSGFKSPHPHPSPNPNFASNKESPPEHPIEVIARIRDYPDRKDKPLSVLQASSNSRSIRVRADFGYRDFTLDGVSLSEEEELDLFYKKFVESRINGVKLGDKCTIMMYGPTGSGKSHTMFGCAKQAGIVYKALRDILGDGDTDSEISGDGSDGDSIGLRTFVQVTVLEIYNEEIYDLLTTNGGGGGGFGFGWSKSNASKVKLEVMGKKAKNATYISGNEAGKISKEIQKVEKRRIVKSTLCNDRSSRSHCMVILDVPTVGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMILCASPDPKEIHKTISTLEYGAKAKCIVRGPHSPVKEEDSSSTVILGSRIAAMDEFIMKLQMENKLKEKERNEAHKKLMKKEEEIAELRAKVETAPAASEEEINLKVNERTRLLRQELEKKLEECQRMTNDFVELERKRMEERILQQQEEVEILRKRLEEIELQLSSSKQERKDENGSKEMEPSGFMRKLLSVYKSEDDLAMVKSMDLDMDDQEPFLAREVIVGMQGISPIQPCSNTLNVDQEYAPNFGPKACLSTVYEEEGEGEGEQDHEDSVEEDEEVEKEVIEEKRVCSVGKSPKKEDFSVADKENNGSNRMLRIHNIFTLCGNQRELSQFGTPVPTKYSPVKSSEKKDSVLRISNKENLEQNVVAN 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01622 731 Coils Coil 469 532 - -
Vifa3g01622 731 Coils Coil 418 452 - -
Vifa3g01622 731 PRINTS Kinesin heavy chain signature 125 146 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g01622 731 PRINTS Kinesin heavy chain signature 287 305 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g01622 731 PRINTS Kinesin heavy chain signature 337 358 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g01622 731 PRINTS Kinesin heavy chain signature 264 281 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g01622 731 Gene3D Kinesin motor domain 37 391 IPR036961 -
Vifa3g01622 731 SMART kinesin_4 51 396 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g01622 731 MobiDBLite consensus disorder prediction 1 51 - -
Vifa3g01622 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 395 IPR027417 -
Vifa3g01622 731 Pfam Kinesin motor domain 76 388 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g01622 731 MobiDBLite consensus disorder prediction 1 26 - -
Vifa3g01622 731 PANTHER KINESIN-RELATED 56 639 IPR027640 GO:0003777|GO:0007018
Vifa3g01622 731 MobiDBLite consensus disorder prediction 621 639 - -
Vifa3g01622 731 ProSiteProfiles Kinesin motor domain profile. 53 388 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g01622 731 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 35 393 - -
Vifa3g01622 731 MobiDBLite consensus disorder prediction 619 639 - -
Vifa3g01622 731 MobiDBLite consensus disorder prediction 694 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01622 Vifa-Chr3 418442121 418445151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01622 108 392 Calmodulin-binding Proteins AT5G65930 27.667 6.15e-25 109