Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01617 ATGAGAATCAGATATCTTCATCTCAAGCTCAAGGCATTTAGGTTGAAAAGGTTTCTGCTAAGAGTTCTAGGCAGAAAGAGAAGGCTTATGCCAGCAAAGAAGCCTTCATGGATGACACCAGTAACACATGGTTATCAAGTGGTGGAGCATCATATGATCATAGATGGTTCAGATTACTCAGATTTTGATTCAATAGTGGTACAGAGAGAGCAAATGGATCAAACAGAATTGTGGTATTTTGGAATCTTTGATCCACTAGTTGGAGACAAGGTTACCAAGTACATGCAGACTCATTTCTTTTCAAAGAAGCTTCAAGAGGCTCAAATATGGAGAAAAGGCAAAGAAATGTTGAAGAGAGCTTATCTTGGTGTAAGAGCAAAGATGGGAGAAGAAAATAGAGATGAAGAAACATGTAGAATGGGTTCAGCATCTGTTATGGTAATCAATGGAGAAAAACTTATAATAGCTAACATAGGAAATTACAGAGTTGTTGTGTGTAGAGATGGCATGGCTCATCAGAAAACAGACACATATCAACAATCGGCCAAAAGACATTGGTCTCACAGAATATTTTCAGCATATGAATCAGGAAATGGTGTAGCTACCAGGCATTCTAGCAGCACAGAACTTGTGATCAGAAGTGAAAGTATTGATTCTAATACTGAATTTCTAATACTAGCAAGCAATGGCATATGGGAGGTAATGAAGAACCAAGAGGCTGTGAGTCTAATAAGTCACATAGAAGATCCACAAGAAGCAGCTGAATGCTTGGCAAATGAAGCTTTAAATAGGATGAGCAAAAGCAACATCTCATGCTTAATCATTCGCTTTGAATGA 837 0.3811 MRIRYLHLKLKAFRLKRFLLRVLGRKRRLMPAKKPSWMTPVTHGYQVVEHHMIIDGSDYSDFDSIVVQREQMDQTELWYFGIFDPLVGDKVTKYMQTHFFSKKLQEAQIWRKGKEMLKRAYLGVRAKMGEENRDEETCRMGSASVMVINGEKLIIANIGNYRVVVCRDGMAHQKTDTYQQSAKRHWSHRIFSAYESGNGVATRHSSSTELVIRSESIDSNTEFLILASNGIWEVMKNQEAVSLISHIEDPQEAAECLANEALNRMSKSNISCLIIRFE 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01617 278 CDD PP2Cc 63 277 IPR001932 -
Vifa3g01617 278 Coils Coil 274 278 - -
Vifa3g01617 278 SUPERFAMILY PP2C-like 67 277 IPR036457 -
Vifa3g01617 278 Gene3D - 55 278 IPR036457 -
Vifa3g01617 278 SMART PP2C_4 40 275 IPR001932 -
Vifa3g01617 278 PANTHER PROTEIN PHOSPHATASE 63 277 IPR015655 GO:0004722|GO:0006470
Vifa3g01617 278 Pfam Protein phosphatase 2C 76 180 IPR001932 -
Vifa3g01617 278 Pfam Protein phosphatase 2C 211 270 IPR001932 -
Vifa3g01617 278 ProSiteProfiles PPM-type phosphatase domain profile. 59 277 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01617 Vifa-Chr3 418136697 418137952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01617 6 277 PP2C-type Phosphatase Gene Family AT3G23360 48.352 1.26e-83 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01617 K19704 - gmx:100785227 378.252