Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01616 ATGAGAATCAGATATCTTCATCTCAAGCTCAAGGCATTTAGGTTGAAAAGGTTTCTGCTAAGAGTTCTAGGCAGAAAGAGAAGGCTTATGCCAGCAAAGAAGCCTTCATGGATGACACCAGTAACACATGGTTATCAAGTGGTGGAGCATCATATGATCATAGATGGTTCAGATTACTCAGATTTTGATTCAATAGTGGTACAGAGAGAGCAAATGGATCAAACAGAATTGTGGTATTTTGGAATCTTTGATCCACTAGTTGGAGACAAGGTTACCAAGTACATGCAGACTCATTTCTTTTCAAAGAAGCTTCAAGAGGCTCAAATATGGAGAAAAGGCAAAGAAATGTTGAAGAGAGCTTATCTTGGTGTAAGAGCAAAGATGGGAGAAGAAAATAGAGATGAAGAAACATGTAGAATGGGTTCAGCATCTGTTATGGTAATCAATGGAGAAAAACTTATAATAGCTAACATAGGAAATTACAGAGTTGTTGTGTGTAGAGATGGCATGGCTCATCAGAAAACAGACACATATCAACAATCGGCCAAAAGACATTGGTCTCACAGAATATTTTCAGGAAATGGTGTAGCTACCAGGCATTCTAGCAGCACAGAACTTGTGATCAGAAGTGAAAGTATTGATTCTAATACTGAATTTCTAATACTAGCAAGCAATGGCATATGGGAGGTAATGAAGAACCAAGAGGCTGTGAGTCTAATAAGTCACATAGAAGATCCACAAGAAGCAGCTGAATGCTTGGCAAATGAAGCTTTAAATAGGATGAGCAAAAGCAACATCTCATGCTTAATCATTCGCTTTGAATGA 825 0.3818 MRIRYLHLKLKAFRLKRFLLRVLGRKRRLMPAKKPSWMTPVTHGYQVVEHHMIIDGSDYSDFDSIVVQREQMDQTELWYFGIFDPLVGDKVTKYMQTHFFSKKLQEAQIWRKGKEMLKRAYLGVRAKMGEENRDEETCRMGSASVMVINGEKLIIANIGNYRVVVCRDGMAHQKTDTYQQSAKRHWSHRIFSGNGVATRHSSSTELVIRSESIDSNTEFLILASNGIWEVMKNQEAVSLISHIEDPQEAAECLANEALNRMSKSNISCLIIRFE 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01616 274 SUPERFAMILY PP2C-like 67 273 IPR036457 -
Vifa3g01616 274 ProSiteProfiles PPM-type phosphatase domain profile. 59 273 IPR001932 -
Vifa3g01616 274 PANTHER PROTEIN PHOSPHATASE 63 273 IPR015655 GO:0004722|GO:0006470
Vifa3g01616 274 SMART PP2C_4 40 271 IPR001932 -
Vifa3g01616 274 CDD PP2Cc 63 273 IPR001932 -
Vifa3g01616 274 Gene3D - 55 274 IPR036457 -
Vifa3g01616 274 Pfam Protein phosphatase 2C 209 266 IPR001932 -
Vifa3g01616 274 Pfam Protein phosphatase 2C 76 181 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01616 Vifa-Chr3 418136697 418137952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01616 6 273 PP2C-type Phosphatase Gene Family AT3G23360 48.352 7.33e-82 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01616 K19704 - gmx:100785227 370.548