Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01607 ATGGATCATGTTATTGGTGGAAAATTCAAACTTGGGAGGAAGATTGGGGGTGGGTCATTTGGAGAGCTTTACTTGGGTGTGAATGTACAAACTGGAGAGGAAGTTGCTGTCAAACTGGAACCTTCGAAGACCAAGCATCCTCAACTTCACTATGAGTCAAAATTGTACATGCTTCTTCAAGGGGGAACGGGTATTCCCCATTTAAAATGGTATGGAGTTGAGGGTGACTACAATGCCATGGCGATTGACCTCCTCGGACCAAGTCTTGAAGACTTGTTTAACTATTGCAATAGGAAATTGTCTCTGAAAACAGTTCTGATGCTTGCAGATCAGCTACTAAACAGAGTTGAGTACATGCACTCCCGGGGTTTCCTGCACCGTGATATAAAGCCTGACAACTTTTTAATGGGCTTAGGCCGCAAAGCAAATCAGGTATACATAATTGATTATGGCCTTGCAAAAAAGTTTCGAGATCTTCACACGCACAAGCATATACCATATAGGGAAAACAAAAACCTCACCGGAACTGCCCGGTATGCGAGTGTTAATACCCATCTGGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTGTTCATGTACTTTTTGAGAGGAAGTCTCCCTTGGCAAGGTTTGAGAGCTGGCAATAAAAAACAAAAATATGACAAAATAAGTGAAAAGAAGATGCTGACTCCTATAGAGATTTTGTGCAAGTCACATCCATTGGAATTTACATCATACTTCCATTATTGCCGATCGCTGCGGTTTGAAGATAAGCCTGATTATTCATATCTCAAAAGACTCTTCCGTGACCTATTCATCCGAGAAGGCTATCAGTTTGATTATGTGTTTGATTGGACAATATTGAAATATCCACAAATTGGATCCAGTTCCAAAGTCCGACCAAGTGGGAAACCAGTCATAAATCCAGGACAATCTGGAGAGAGAATCGAGCGGCCTTCAGGTGGACCAGAGGTTCGTGATAGATTCTCAGGTGCAGTTGAGGCATTTGCAAGAAGGAATGTGTCTGGGCATGGTCTGCATGGCGATCATTCCAGGCATAGGTCAAAGGATGACGGGCCGTCTTCTAAAGACGTGCAACCCAATTCTGAGAGGCTCCGTAGCTCTTCTCGTCATGGCAGTTCTTCAAAAAGGCCCGTCTTATCAAGCAGCCGTCCAAACTCTTCAGGTGAACCGAGTGAAAGCCGCCGACTGGTCATGAGCAGTAGCCGGCTATCTACTACTCAGAGAACTCAACCAGGTTTGGAGTCCAAAACATCATCATTTAATCGTGCTTCTGGGACAAGAGGTGGCCGTGATGATACACTCAGGAGCTTTGAACTCCTATCACTTGGCACAGGAAAAAGGAAATGA 1386 0.4408 MDHVIGGKFKLGRKIGGGSFGELYLGVNVQTGEEVAVKLEPSKTKHPQLHYESKLYMLLQGGTGIPHLKWYGVEGDYNAMAIDLLGPSLEDLFNYCNRKLSLKTVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKFRDLHTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVFMYFLRGSLPWQGLRAGNKKQKYDKISEKKMLTPIEILCKSHPLEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSKVRPSGKPVINPGQSGERIERPSGGPEVRDRFSGAVEAFARRNVSGHGLHGDHSRHRSKDDGPSSKDVQPNSERLRSSSRHGSSSKRPVLSSSRPNSSGEPSESRRLVMSSSRLSTTQRTQPGLESKTSSFNRASGTRGGRDDTLRSFELLSLGTGKRK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01607 461 MobiDBLite consensus disorder prediction 348 369 - -
Vifa3g01607 461 MobiDBLite consensus disorder prediction 370 439 - -
Vifa3g01607 461 CDD STKc_CK1_delta_epsilon 8 282 - -
Vifa3g01607 461 PANTHER CASEIN KINASE-RELATED 9 401 - -
Vifa3g01607 461 MobiDBLite consensus disorder prediction 346 461 - -
Vifa3g01607 461 Gene3D Transferase(Phosphotransferase) domain 1 1 320 - -
Vifa3g01607 461 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vifa3g01607 461 SMART serkin_6 9 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01607 461 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01607 461 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vifa3g01607 461 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01607 461 MobiDBLite consensus disorder prediction 300 332 - -
Vifa3g01607 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vifa3g01607 461 FunFam Casein kinase 1-like protein 1 329 - -
Vifa3g01607 461 FunFam Putative Casein kinase I 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01607 Vifa-Chr3 415925133 415931180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01607 8 213 MAP Kinase Kinase Kinase AT3G06030 25.926 3.52e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vifa3g01607 Pkinase 1.3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01607 K08960 - cave:132177205 812.372