Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01606 ATGGATGGTTGCTGGTTTCATAAGTTCAAGTCAAACAAGGATAAAATGCAGTCTTCAAAAAACAAGGAAACTGCAAGCGTTGTGAAAGAAAGGTCAAAGCCCCCAACAAATGACGAAGCTCCTTCAAATGTCACTGTACAGAAAGTTGCAGCTGCAAAGCAGTACATAGAAAATCATTATAAGAAGCAGATGAAGAACCTGCAGGAGAGAAAAGAACGACGTAATATGCTCGAAAGAAAGTTGGCTGACTCTGAAGTCTCCGAGGAAGAGCAGAACAACTTGCTTAGGTTTTTTGAGAAAAAGGAGAGGGAATACATGCGACTTCAGAGGCATAAGATGGATGCTGATGATTTTGAGCCCCTGACTATGATAGGGAAGGGTGCATTTGGAGAGGTCAGAATCTGCCGAGAGAAGGCAACTGGTAATGTATATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTTCGCCGAGGCCAGGTTGAACATGTAAAAGCCGAGAGGGACCTACTTGCAGAAGTTGACAGCAATTACATTGTAAAGCTTTATTGTTCCTTTCAAGACGAAGACTGTTTATATCTTATAATGGAGTATCTTCCTGGTGGTGATATGATGACATTGCTCATGCGGAAGGATATACTGACAGAGTATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCTATAGAGTCTATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGATAACTTGCTCCTAGATAGACATGGTCACATGAAATTATCAGACTTTGGATTATGTAAACCACTAGACTGCAGTAATCTTCAGGAAAAGGACTTCTCTACTGGAATCAACAGAAGTGGAGCCCTTCAGAGCAATGGACAACCTGTGGCTCCTAAAAGGACCCAGCAGGAGCAGCTGCTGCATTGGCAGAAAAATAGGCGAATGCTTGCCTATTCTACAGTAGGAACACCTGACTATATTGCCCCTGAAGTTCTCCTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCTTTGGGAGCTATAATGTATGAAATGCTTGTGGGATATCCACCCTTTTATTCAGATGAACCAATGTTAACTTGTAGAAAGATAGTCAATTGGAGAAATTATTTAAAATTTCCAGAAGAAGCTAAACTATCAGCAGAGGCAAAGGATCTTATTAGTAGACTCCTATGTAATGTGGAACAGAGGCTTGGAACCAGAGGGGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAATTGTACCAAATGAAAGCTGCTTTTATTCCTGAGGTCAATGATGAATTGGATACTCAAAATTTTGAGAAATTTGAAGAGGTGGACCGCCAATCTCAACCTTCCTCAAAATCAGGCCCGTGGAGAAAGATGCTGTCATCTAAGGATGTTAACTTTGTTGGCTACACATATAAGAACTATGAAATCGTGAATGATAATCATCTATCTGGAATGGCTGAACTGAAGAAGAAGAGCACAAAACCTAAACGGCCATCTATTAAGACCCTATTTGATGATGATTCGGCTACGAGTGCCAATCAACCTGGCCAAGGGAGCTACTCAACAGGAAGTTCCAGAGGAAAGTGA 1614 0.4126 MDGCWFHKFKSNKDKMQSSKNKETASVVKERSKPPTNDEAPSNVTVQKVAAAKQYIENHYKKQMKNLQERKERRNMLERKLADSEVSEEEQNNLLRFFEKKEREYMRLQRHKMDADDFEPLTMIGKGAFGEVRICREKATGNVYAMKKLKKSEMLRRGQVEHVKAERDLLAEVDSNYIVKLYCSFQDEDCLYLIMEYLPGGDMMTLLMRKDILTEYEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRHGHMKLSDFGLCKPLDCSNLQEKDFSTGINRSGALQSNGQPVAPKRTQQEQLLHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRNYLKFPEEAKLSAEAKDLISRLLCNVEQRLGTRGADEIKAHPWFKGVEWDKLYQMKAAFIPEVNDELDTQNFEKFEEVDRQSQPSSKSGPWRKMLSSKDVNFVGYTYKNYEIVNDNHLSGMAELKKKSTKPKRPSIKTLFDDDSATSANQPGQGSYSTGSSRGK 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01606 537 FunFam Non-specific serine/threonine protein kinase 89 201 - -
Vifa3g01606 537 FunFam Non-specific serine/threonine protein kinase 202 269 - -
Vifa3g01606 537 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Vifa3g01606 537 SMART pkinase_C_6 418 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa3g01606 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 469 - -
Vifa3g01606 537 SMART serkin_6 118 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01606 537 Gene3D Phosphorylase Kinase; domain 1 436 446 - -
Vifa3g01606 537 Gene3D Phosphorylase Kinase; domain 1 116 201 - -
Vifa3g01606 537 MobiDBLite consensus disorder prediction 497 512 - -
Vifa3g01606 537 SUPERFAMILY Protein kinase-like (PK-like) 93 470 IPR011009 -
Vifa3g01606 537 CDD STKc_NDR_like 116 481 - -
Vifa3g01606 537 MobiDBLite consensus disorder prediction 12 36 - -
Vifa3g01606 537 MobiDBLite consensus disorder prediction 497 537 - -
Vifa3g01606 537 Pfam Protein kinase domain 120 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01606 537 Gene3D Transferase(Phosphotransferase) domain 1 313 435 - -
Vifa3g01606 537 Gene3D Transferase(Phosphotransferase) domain 1 202 268 - -
Vifa3g01606 537 Coils Coil 60 87 - -
Vifa3g01606 537 FunFam Non-specific serine/threonine protein kinase 316 435 - -
Vifa3g01606 537 MobiDBLite consensus disorder prediction 12 44 - -
Vifa3g01606 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Vifa3g01606 537 ProSiteProfiles AGC-kinase C-terminal domain profile. 418 490 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa3g01606 537 Pfam Protein kinase C terminal domain 436 480 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vifa3g01606 537 MobiDBLite consensus disorder prediction 513 537 - -
Vifa3g01606 537 CDD MobB_NDR_LATS-like 52 113 - -
Vifa3g01606 537 ProSiteProfiles Protein kinase domain profile. 118 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01606 Vifa-Chr3 415855957 415861640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01606 23 529 AGC Kinase Gene Family AT4G14350 81.854 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vifa3g01606 Pkinase 1.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01606 K08790 - gmx:100805439 968.763