Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01602 ATGGGACAAGGGCAATCGAAAAGCGAGTTGCTCTACCAGCAAGTCAGTTATGGGAATTCCGATGGAATCAAAGCGCTTCACAGAGATGGTGCAGGTCTCGAGTATATGGATAGAGAAGGAAAAACACCGTTGATTGTTGCTTGTATGAATCCTGAACTTTACAATATTGCTAAAACGTTGATTGAACTTGGAGCCAATGTCAATGCATACCGTCCTGGACGTCATGCTGGGACTCCGTTGCATCATGCAGCTAAAAGGGGCCTTGAAAGTATTGTTAAGTTACTTCTTTCGCACGGAGCCAATCCTTTGGTGTTGAATGATGATTGTCAAACTGCTCTTGAGGTTGCTAGGGCTAAAGGAAATAGCAATGTTGTTCGTGCATTGGAGAGTCATTTATGCTTGTTCTCCGGTTGGTTGCGGGAGTTTCATGGACCTGGGTTTCTAGAAGTAGTAGCTCCTAATTTGGTAACGAGGAAAGTTTGGGTGGTAGTTTTGCCAGTAGGCTCCCGTGGTTTCACCATGCCTTACAAGTTGGAGCTTGCCGTATATTCCACTATGCAGGATGCAAAACCGCGTACAATTGTTCCTCTATGGAAGGCCAAATTAGAAGAACCAAGGCTTCGTCAGTCTGATCCGTCAGTGGCAATTAGTGATAAGACTACCAAAACACGTCTTAAATTTGGGCCTGCAAATGAAAACGACAGGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATACCACAGGTAAGTCCAGCATTTTTGAATAATAATGTGGCTACCGTTCCACCAATAGCACCAACAGCACCACCTGCTGCTGAAGACCCTGAGTTGGCTATGGCTATCCATGCATCTATTCAGCATGCCAACATGGAGAGGCCAAGCTTTCCCGATGCAAGTTCTTCCATCAGTGGAGCGAATGCAGTGCAAGGTTTTCTTGGTACACCAAGTCAAAATTCAAATGCTAATGAGTTTGTACATGAATCTGTTTCAGTTGACGATACTCAACATGTCCAGAGCGATGGTAATGTCTCTGCCGGCCACACTGCCAGTGGTCTGGATGTCAATCCATCAGCTCCTCCATTTGCTGATGAGGTTACATTTGATGGCCCGATTCATTATCCGTCAATTGATTTGAGCCTTGTTGATGTATCATCTTCAGCAGTTGAGAAGCTACCTAACGAAGAAGGAATATCTGCTGGAGGAAGCAGTTCAACGTGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCATGTGGCCATGTTGCTGGATGCATGTCATGCTTGAATGAAGTTAAAACCAAGAAATGGGGTTGCCCTGTTTGTCGAGCTAAGATAGACCAGATCATAAAGCTATATCATGTTTGA 1380 0.4464 MGQGQSKSELLYQQVSYGNSDGIKALHRDGAGLEYMDREGKTPLIVACMNPELYNIAKTLIELGANVNAYRPGRHAGTPLHHAAKRGLESIVKLLLSHGANPLVLNDDCQTALEVARAKGNSNVVRALESHLCLFSGWLREFHGPGFLEVVAPNLVTRKVWVVVLPVGSRGFTMPYKLELAVYSTMQDAKPRTIVPLWKAKLEEPRLRQSDPSVAISDKTTKTRLKFGPANENDRQQLTWFSNACKGIPQVSPAFLNNNVATVPPIAPTAPPAAEDPELAMAIHASIQHANMERPSFPDASSSISGANAVQGFLGTPSQNSNANEFVHESVSVDDTQHVQSDGNVSAGHTASGLDVNPSAPPFADEVTFDGPIHYPSIDLSLVDVSSSAVEKLPNEEGISAGGSSSTCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQIIKLYHV 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01602 459 MobiDBLite consensus disorder prediction 339 353 - -
Vifa3g01602 459 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Vifa3g01602 459 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Vifa3g01602 459 PANTHER ROLLING PEBBLES, ISOFORM B 25 258 - -
Vifa3g01602 459 ProSiteProfiles Zinc finger RING-type profile. 408 447 IPR001841 -
Vifa3g01602 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 458 IPR013083 -
Vifa3g01602 459 Gene3D - 79 132 IPR036770 -
Vifa3g01602 459 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Vifa3g01602 459 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Vifa3g01602 459 SUPERFAMILY RING/U-box 407 453 - -
Vifa3g01602 459 Gene3D - 3 78 IPR036770 -
Vifa3g01602 459 SMART ANK_2a 39 69 IPR002110 GO:0005515
Vifa3g01602 459 SMART ANK_2a 75 104 IPR002110 GO:0005515
Vifa3g01602 459 SMART ANK_2a 108 137 IPR002110 GO:0005515
Vifa3g01602 459 CDD RING-HC_XBAT35-like 404 457 - -
Vifa3g01602 459 MobiDBLite consensus disorder prediction 339 359 - -
Vifa3g01602 459 Pfam Zinc finger, C3HC4 type (RING finger) 406 453 - -
Vifa3g01602 459 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Vifa3g01602 459 SMART ring_2 408 446 IPR001841 -
Vifa3g01602 459 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01602 398 456 C3H Transcription Factor Family AT3G06140 32.203 1.08e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01602 - - lang:109354249 670.233