Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01598 ATGTTTGCGTTGAATATTACTGACATAAAAACTTTTGAGCTGAAACTGAAGTTTGGATTTGGCTTACACGGCAGGGTTCACATAACAGAGGTACATGATGCAAATGATTTGGAAAATCCATTTTCTGGCTACAAAATTGGGCAAACAGTGACGGCAAGAATAGTTTCAAAGCCTAATGATGCTGATAGCAGCAGAAATGGATCACGGTGGGAGCTTTCAGTCCGACCTGAAATGATGAAATACAAAGAACGAGTGCTTGGATTGATTCTTGTTTCACCGATTTGTAAAGGACCTTCATGGACTGAATGGATTTACAACAAGGTCTTGATGAACTTATTGTACTTCTATGGTATGTGCGGTTTACTGAAGGAATGCCTCCTGCAACGTTACTTCAGTAAGGAGCTTAGATGCAGTATTGAGGGATCAGAATCAGAAGTAATACTAACTTGCCAAAGAGTACATTCTCTTTTCTGTTTTGTATGCGTAAAATTTATAATGCTGAATATATTTTTTGCAGGAACAGACACAAGCACGTACACACTAGAATGGGCAATGGCAGAGTTAATGCACAATCCAGAAATCATGTCAAAAGTACAAAATGAACTCGAACAAGTTGTTGGCAAAGGTATTCCAGTCGAAGAAACAGACATAGCCAAATTACCATACATGCAAGCAGTTATAAAAGAGACGTTTCGTGTACATCCACCAGTTCCGTTATTACTACCTCGCAAAGCAGAAACAGATGTTGAAATTGGTGACTACATTATTCCAAAAGATGCACAAGTTTTGGTTAATGCTTGGGTTATTGGCAGAGATCCAAGTAAATGGGAGAATCCTAATGCTTTTGTGCCGGAGAGATTTTTCAATAGTGAGATTGATTTTAAAGGACATCATTTTGAGCTTATTCCATTTGGGTCTGGTAGAAGAATTTGTCCTGGTTTGCCTTTGGCTATTAGAATGTTGCCTTTGATGTTGGGATCTTTGGTTAATTGCTTTGATTGGAGACTTGAAGATGGATTGAATGTCGATGATTTGAATAAGGAAGATGAGTATGGGATTACCTTGGAAAAATCTCAACCTGTGAGAATTGTTCCAATCAAATTGACTAAGCAATAA 1116 0.3799 MFALNITDIKTFELKLKFGFGLHGRVHITEVHDANDLENPFSGYKIGQTVTARIVSKPNDADSSRNGSRWELSVRPEMMKYKERVLGLILVSPICKGPSWTEWIYNKVLMNLLYFYGMCGLLKECLLQRYFSKELRCSIEGSESEVILTCQRVHSLFCFVCVKFIMLNIFFAGTDTSTYTLEWAMAELMHNPEIMSKVQNELEQVVGKGIPVEETDIAKLPYMQAVIKETFRVHPPVPLLLPRKAETDVEIGDYIIPKDAQVLVNAWVIGRDPSKWENPNAFVPERFFNSEIDFKGHHFELIPFGSGRRICPGLPLAIRMLPLMLGSLVNCFDWRLEDGLNVDDLNKEDEYGITLEKSQPVRIVPIKLTKQ 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01598 371 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 304 313 IPR017972 GO:0005506|GO:0016705
Vifa3g01598 371 ProSiteProfiles S1 domain profile. 1 75 IPR003029 GO:0003676
Vifa3g01598 371 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 162 367 - -
Vifa3g01598 371 SUPERFAMILY Cytochrome P450 157 364 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01598 371 PRINTS P450 superfamily signature 225 236 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01598 371 PRINTS P450 superfamily signature 172 189 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01598 371 PRINTS P450 superfamily signature 302 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01598 371 PRINTS P450 superfamily signature 311 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01598 371 FunFam Geraniol 8-hydroxylase 160 364 - -
Vifa3g01598 371 PRINTS E-class P450 group I signature 311 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01598 371 PRINTS E-class P450 group I signature 161 178 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01598 371 PRINTS E-class P450 group I signature 224 242 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01598 371 PRINTS E-class P450 group I signature 265 289 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01598 371 PRINTS E-class P450 group I signature 301 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01598 371 PRINTS E-class P450 group I signature 181 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01598 371 Gene3D - 2 78 IPR012340 -
Vifa3g01598 371 Gene3D Cytochrome P450 161 370 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01598 371 SUPERFAMILY Nucleic acid-binding proteins 6 77 IPR012340 -
Vifa3g01598 371 Gene3D alpha/beta hydrolase 79 155 IPR029058 -
Vifa3g01598 371 Pfam Ndr family 79 152 IPR004142 -
Vifa3g01598 371 Pfam Cytochrome P450 166 353 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01598 Vifa-Chr3 412081956 412084428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01598 162 367 Cytochrome P450 AT2G45550 55.825 3.32e-85 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01598 - - cave:132173603 300.056