Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01587 ATGGAAGATGGTTCAATCATGAAATATGAAAAGGTCTCGCCATTCTTCACGTGTATTTTGTGTGATCGAGTTTTGAGGAATGCCACCACAATTTCTGAATGCTTAGATACTTTTTGCAGGGAATGTATAGAAAGGAAGATAATTGATGAGAATCTAAATCATTGTCCAATATGCAATGTAGACTTGGGATGTTCTCCATTAGACAAACTAAGGACAGATAATAATAAGATAACAATGATTAGTAAAGTTCTGACCTCTACAGAAAAACATTTGGGGAATGTTGCTTCAACGCAAGTAGTTAGCAATAAAAGGAAGAAATCTCAAGTCTCTTTGAAATCCTACGCCAAAAAGGCGAAAACAGATTCAAAGAAAATTAAGAAAGAGGTGAGAAAAGGAAAGCAGATTCAGCAAGAGGCAAAGCAGCTGCAGGAAGAACTTCCTATCACTCCACAGGAACCAAAAACTCCTGCTTCTGATATCGCTGTTGCAGCGGATGTTAAGAAAGACGCGGAACAACAACGGGGAATAGAAATTTTGGATGAAGTTTCTACAATTCTATCTGCCAGAAAAGCAAAAAATGTGGCAAGAAAAAAGTTTATCAGAACTGAATTAGATTCTACTTCTCAGCCTGACAAAGTTCATCCAAAATTTCATGGTGGAAATAATGATGATAATCGCCCTCGGCTTGAAACATTCACTGAGACTCCAAAAATCAGATTTAAGAGTTTTTCAAAACCAGAATCATCAAACCAGCAGACAGTGTTCAAGAATGTTTCTAGGGACAAAGCTGAGTTAAGAAAAGAAAAAGCTGCTGTTAGCGAGCCGTTGAACTGGTTTGTGGAAACTACCAAGGCGGACAATTCTCTTAATAACACCCCCCAGCAAGGAAATGGTGTCATCCCAATGCTTGTGGACTCTAGTGATAGCGACTCTCGTATCGTTTCTAAGGCTGCTGTTAACAAGCATTGTAACCACCAAACAGAAGCAGGTGGCGATCAAAATGAGTCTGGTCCATCAAAATCAAGTTCCTTGAAGTTTAAGATTAGAAGGGTGGACACAACCCAAGAAAAGAGAGTGAGATTTTCAGAGGACTTGAACCTCCCTGCACCACCTGAAGTTGAAAGCAAAAAAGACTTGGGTCCTGTCTGGTTCTCCTTGATTGCTTCTAAGGATCGAGAACTCGGTGCGCTGCCACAAATATCTTCTCATTACTTAAAAGTCCAGGATGGAAGTTTAACTGTTTCATATATCAAAAAGTATCTTGTGAAGAAGCTTGATCTTACTAGTGAAGCTGAGGTGGAGATTTTATTAGGAGGGAAGCCAGTTTATTGTTCAATGCAGGTGCAAAACTTGATGGAGCTGTGGTTGGAAACAATGTCAAAGAAAGAAATGATTGAGACATCTGTTGGAAGTTCAGCTGAGGATTTTGTTATGGTCCTTTCTTATGGTAGAAAGGCTTGA 1461 0.3936 MEDGSIMKYEKVSPFFTCILCDRVLRNATTISECLDTFCRECIERKIIDENLNHCPICNVDLGCSPLDKLRTDNNKITMISKVLTSTEKHLGNVASTQVVSNKRKKSQVSLKSYAKKAKTDSKKIKKEVRKGKQIQQEAKQLQEELPITPQEPKTPASDIAVAADVKKDAEQQRGIEILDEVSTILSARKAKNVARKKFIRTELDSTSQPDKVHPKFHGGNNDDNRPRLETFTETPKIRFKSFSKPESSNQQTVFKNVSRDKAELRKEKAAVSEPLNWFVETTKADNSLNNTPQQGNGVIPMLVDSSDSDSRIVSKAAVNKHCNHQTEAGGDQNESGPSKSSSLKFKIRRVDTTQEKRVRFSEDLNLPAPPEVESKKDLGPVWFSLIASKDRELGALPQISSHYLKVQDGSLTVSYIKKYLVKKLDLTSEAEVEILLGGKPVYCSMQVQNLMELWLETMSKKEMIETSVGSSAEDFVMVLSYGRKA 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01587 486 Coils Coil 125 145 - -
Vifa3g01587 486 MobiDBLite consensus disorder prediction 326 343 - -
Vifa3g01587 486 MobiDBLite consensus disorder prediction 205 229 - -
Vifa3g01587 486 ProSiteProfiles Zinc finger RING-type profile. 18 59 IPR001841 -
Vifa3g01587 486 SUPERFAMILY RING/U-box 10 73 - -
Vifa3g01587 486 MobiDBLite consensus disorder prediction 130 157 - -
Vifa3g01587 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 102 IPR013083 -
Vifa3g01587 486 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 174 485 IPR044807 GO:0004842
Vifa3g01587 486 MobiDBLite consensus disorder prediction 326 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01587 Vifa-Chr3 411103545 411106044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01587 7 131 C3H Transcription Factor Family AT2G30580 40.152 2.19e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01587 K16277 - pop:7474161 241.506