Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01586 ATGGCTCGAGATGGCAGCGTTGTCCCTGCGGACCCACAGGCTATGGTAGTTGCGAAGAAGAAGACACAGTCTGCTAGAAGTTGGATTCTGTTTGATGCTACGGGCCAAGGTTCCATACTTGACGTGGACAAGTATGCTATCATGCATAGGGTTCAGATTAATGCACGTGATCTTAGAATCCTTGATCCCTTTCTCTCTTACCCTTCTACCATTCTCGGTCGTGAGAAGGCTATTGTTCTTAATTTAGAGCATATCAAGGCTATTATCACTGCTGAAGAGGTATTGCTGCGAGATCCAACAGATGAACATGTTGTCCCTGTCGTTGAGGAACTGCAGAGGCGATTGCCTAAACAAGGAGATGGTAAAGAGTATCTTGGCGGTCAAAATGATAACGAAGCTGCTGAAGAAGATGAGTCACCGTTTGAGTTCCGTGCCCTGGAGGTAGCCTTAGAAGCCATTTGTAGTTTTCTTGCTGCACGTACAACTGAGTTGGAGATGGCTGCTTATCCTGCATTAGATGAACTTACTTCCAAGATTAGTAGTCGTAATCTTGACAGAGTTCGTAAACTGAAGAGTGCAATGACAAGGCTGACTGCTCGGGTTCAAAAGGTCAGAGATGAGCTTGAACAATTGCTGGATGATGACGATGATATGGCTGATCTATACCTATCGAGAAAGGCAGGTTCAGCATCACCAGTTAGTGGATCCGGTCACGCGAATTGGTTTGCTGCTTCCCCAACTGGAGGATCGAAGATATCCAGAGCAAGTCGAGCAAGTATTGCAACAATGCGTTTAGATGAAAATGATGTGGAAGAGCTTGAAATGTTACTTGAGGCTTATTTCATGCAAATTGATGGTACATTAAACAAACTAACCACACTGCGAGAGTATATTGATGATACCGAAGATTACATTAACATTCAACTAGACAATCATCGTAATCAGCTTATTCAGTTGGAGCTCTTTCTTAGCTCTGGAACTGTATGTCTATCTTTCTACTCTCTGGTGACCGCTATTTTCGGCATGAACATCCCATATACTTGGAATGATGACCATAGCTACATGTTCAAATGGGTAGTTATTTTGGGAGGAGTATTCTCTGCTATTATGTTTCTCATGATTACCCTCTTTGCTCTCAAAAAGGGTTTGGTCGGAACATGA 1161 0.4332 MARDGSVVPADPQAMVVAKKKTQSARSWILFDATGQGSILDVDKYAIMHRVQINARDLRILDPFLSYPSTILGREKAIVLNLEHIKAIITAEEVLLRDPTDEHVVPVVEELQRRLPKQGDGKEYLGGQNDNEAAEEDESPFEFRALEVALEAICSFLAARTTELEMAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKAGSASPVSGSGHANWFAASPTGGSKISRASRASIATMRLDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSFYSLVTAIFGMNIPYTWNDDHSYMFKWVVILGGVFSAIMFLMITLFALKKGLVGT 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01586 386 Coils Coil 187 214 - -
Vifa3g01586 386 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 17 379 IPR039204 -
Vifa3g01586 386 CDD Mrs2_Mfm1p-like 28 383 IPR039204 -
Vifa3g01586 386 MobiDBLite consensus disorder prediction 118 138 - -
Vifa3g01586 386 Gene3D - 14 99 - -
Vifa3g01586 386 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 322 373 IPR045863 -
Vifa3g01586 386 FunFam Magnesium transporter MRS2-1 16 99 - -
Vifa3g01586 386 Gene3D Magnesium transport protein CorA, transmembrane region 102 316 - -
Vifa3g01586 386 Pfam CorA-like Mg2+ transporter protein 257 374 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01586 Vifa-Chr3 410516802 410521061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01586 1 359 MRS2 Gene Family AT5G64560 80.707 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01586 K16075 - gmx:100810239 655.981