Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01582 ATGACACAGGAGTACGAGCCTATAGAAGAACCTGTTCAAGTAAGTGGGCTCAACCTATATACTTTTGTATCATTGAAAAGCTATCTTTTTTATTCATACCATTTATACTCTTTACCTTTTACAGCACCTACCATTGAATTCGGAAGTAGCATGAGAAGGAAACTGAGGAAGATGATGAAGTGTGTGTGTTCAAAAGATAGGTTAAGTGTTGATGAAATGAATTATTCATCAGAGTCTCTTGCAACTAGAGATTATTCAGCAACTGCTAGTGGTTATTCATCTCGACCAGGTGAAAATGAAACTAAGCTGGATAATAGTAACATTGAAGAAGCTGAATCGTCTCTTCGCGAAAGTGGTTACTTAAACTATGAGGAAGCTAGAGCTTTGTTAGGACGACTTGAGTATCAGAAAGGAAACATTGAAGCTGCACTTCATGTATTTGAAGGAATAGATATTGCTGCTGTTATTCCTAAGATGAAAATCTCTATATCTAGAAGATGTGAATCGAATAATAAACGCGGTCTAGAAAATGATTCTGGGCCTTCTATGTCATTACATGCTGTTAGTTTACTTCTTGAAGCTGTTTTTCTTAAGGCTAAATCATTGAAGACTCTTGGAAGGTTTCAAGAAGCTGCTCAATCATGCAAAACAATTTTAAATACTATTGAATCTGCATTACCAGAAGGCTGGCCTGAAAACTTTGTTTCAGATTGTAAATTACAAGAGACGGTAACAAAGGCGGTTGAACTGCTTCCGGAGCTATGGAGCCTTGCAGGTTCACCTCAAGATGTTGTCTTATCATTTAGGAAAGCCTTGCTTTATCATTGGAATCTTGACACTGAAGCAACGGCAAGAATACAAAAGGAATTTGCTTTGTTTCTTTTATACAGCGGTTACGAAGCGGACTCTCCTCCGCTTCGGTCTCAGTTAGACGGTTCCTTTGTTCCGAGAAACAACATAGAAGAAGCGGTTCTTCTGCTTCGGATTCTGGTGAGAAGAAAATCGAAAGATCCTTCAATAATCCATCACCTTTCTTTTGCTCAAAGTGTTTGTGGTGAATTCATGACATTAGCACAGCATGTTGAGGAATTGCTTCCAGAAACCAAGGAGAGAAGAGGAAGATATTATACTCTCTCGCTTTGTTACTATGGCGAAGGCGAGAATATGGTTGCTTTAGATCTTTTGAGGAACTTTTTGAATAATAAAGAAAACTCAGTATACTCAGATTGCATAGAGGAATTGCTTTTAATTTCGAAAATCTGCGCAGACAACAAGGTTTGTGTTGAAGACGGAATCAAATTTTCCAGCAAAGCCATTTCTCAGATGAATGGAAAATGCAATCAAATGGAAGCTATTGCAAATTGTTTACTTGGTGTTCTACTGTCAGCGAAATCCAAGTCAATTTCTTCTGAATCCGAGAAAGTTTCGATACAATCCCAAGCATTTAGTGCTCTAAAAGCTTCTGAAAGAATGATGGAGGATAGTGATTCTAATCCTTACATTGTTAATCATCTTTGCCTAGAATATGCTGAACATAGGAAGCTGAGAATCGCTTACGATCATGCAAAAAAATTGATTAAGCTTGAAGGTGGATCTAGTATTAGTGGATATATACTGCTAGCAAGGATTTTATCAGCCCAAAAAAAGTTTTTTGATGCCGAGACTGTTATCGATGCTGCTTTAGAACAAAGTGGAAAATGGGAACAAGGAGAATTGTTGAGGACTAAAGCTAAGATTCAGATTGCACAAGGAAGATTGAAAAATGCTATTGAGACATACACTTTTCTTCTCGCTGTTCTTCAAGTCCAAAACAAAAATCTAGGAACTGCAAATAAGGCAATGAAGGTAATGAAGTGTAAGCGAAATCGCAACAGAAGACTAGAAATGGAAGTGTGGCATGATTTAACCAATGTATATACAGCTTTGTCGCAATGGTGTGATGCTGAAGTTTGTCTTGCCAAATCTGAAGCTATTGATCCCTATTCTGCTTCTAGATGGCACTCTACAGGTATGCTTTATGAAGCAAGAGGTTTACATCAAGAAGCATTGAAATCATATAGAAAAGCATTGGATATTGATCCCAACCATGTTGCAAGTTTGATATCAACAGCTTGTGTTTTGAGAAAACTTGGTGGTCAATCATCTGGTTCAATTGTTAGAAGCCTTCTCATTGAGGCATTGAGGCTTGATAGAACAAACTCATCTGCATGGTACAATATTGGAGTTGTGTACAAAGATGATTTGGGAACATCAGCATTGGAAGCTGCTGAATGCTTTGAGACAGCTGTTTTTCTTGAGGAATCTTGTCCCATTGAGCCCTTTAGATAA 2328 0.378 MTQEYEPIEEPVQVSGLNLYTFVSLKSYLFYSYHLYSLPFTAPTIEFGSSMRRKLRKMMKCVCSKDRLSVDEMNYSSESLATRDYSATASGYSSRPGENETKLDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVIPKMKISISRRCESNNKRGLENDSGPSMSLHAVSLLLEAVFLKAKSLKTLGRFQEAAQSCKTILNTIESALPEGWPENFVSDCKLQETVTKAVELLPELWSLAGSPQDVVLSFRKALLYHWNLDTEATARIQKEFALFLLYSGYEADSPPLRSQLDGSFVPRNNIEEAVLLLRILVRRKSKDPSIIHHLSFAQSVCGEFMTLAQHVEELLPETKERRGRYYTLSLCYYGEGENMVALDLLRNFLNNKENSVYSDCIEELLLISKICADNKVCVEDGIKFSSKAISQMNGKCNQMEAIANCLLGVLLSAKSKSISSESEKVSIQSQAFSALKASERMMEDSDSNPYIVNHLCLEYAEHRKLRIAYDHAKKLIKLEGGSSISGYILLARILSAQKKFFDAETVIDAALEQSGKWEQGELLRTKAKIQIAQGRLKNAIETYTFLLAVLQVQNKNLGTANKAMKVMKCKRNRNRRLEMEVWHDLTNVYTALSQWCDAEVCLAKSEAIDPYSASRWHSTGMLYEARGLHQEALKSYRKALDIDPNHVASLISTACVLRKLGGQSSGSIVRSLLIEALRLDRTNSSAWYNIGVVYKDDLGTSALEAAECFETAVFLEESCPIEPFR 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01582 775 SUPERFAMILY TPR-like 571 745 IPR011990 GO:0005515
Vifa3g01582 775 SUPERFAMILY TPR-like 193 405 IPR011990 GO:0005515
Vifa3g01582 775 Gene3D Tetratricopeptide repeat domain 98 409 IPR011990 GO:0005515
Vifa3g01582 775 ProSiteProfiles TPR repeat region circular profile. 663 696 - -
Vifa3g01582 775 Gene3D Tetratricopeptide repeat domain 476 771 IPR011990 GO:0005515
Vifa3g01582 775 Pfam Tetratricopeptide repeat 666 696 IPR013105 -
Vifa3g01582 775 MobiDBLite consensus disorder prediction 86 109 - -
Vifa3g01582 775 SMART tpr_5 663 696 IPR019734 GO:0005515
Vifa3g01582 775 SMART tpr_5 192 225 IPR019734 GO:0005515
Vifa3g01582 775 SMART tpr_5 629 662 IPR019734 GO:0005515
Vifa3g01582 775 SMART tpr_5 570 603 IPR019734 GO:0005515
Vifa3g01582 775 SMART tpr_5 534 567 IPR019734 GO:0005515
Vifa3g01582 775 Coils Coil 610 630 - -
Vifa3g01582 775 MobiDBLite consensus disorder prediction 86 101 - -
Vifa3g01582 775 SUPERFAMILY TPR-like 484 593 IPR011990 GO:0005515
Vifa3g01582 775 ProSiteProfiles TPR repeat profile. 663 696 IPR019734 GO:0005515
Vifa3g01582 775 PANTHER PROTEIN NPG1 59 775 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01582 Vifa-Chr3 408841927 408845276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01582 51 775 Calmodulin-binding Proteins AT4G28600 50.744 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01582 K21843 - gmx:100789469 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01582 3 408841927 408845276 Vifa3g01582 3 408841927 408845276 ECH