Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01581 ATGACACAGGAGTACGAGCCTATAGAAGAACCTGTTCAAGTAAGTGGGCTCAACCTATATACTTTTGTATCATTGAAAAGCTATCTTTTTTATTCATACCATTTATACTCTTTACCTTTTACAGCACCTACCATTGAATTCGGAAGTAGCATGAGAAGGAAACTGAGGAAGATGATGAAGTGTGTGTGTTCAAAAGATAGGTTAAGTGTTGATGAAATGAATTATTCATCAGAGTCTCTTGCAACTAGAGATTATTCAGCAACTGCTAGTGGTTATTCATCTCGACCAGGTGAAAATGAAACTAAGCTGGATAATAGTAACATTGAAGAAGCTGAATCGTCTCTTCGCGAAAGTGGTTACTTAAACTATGAGGAAGCTAGAGCTTTGTTAGGACGACTTGAGTATCAGAAAGGAAACATTGAAGCTGCACTTCATGTATTTGAAGGAATAGATATTGCTGCTGTTATTCCTAAGATGAAAATCTCTATATCTAGAAGATGTGAATCGAATAATAAACGCGGTCTAGAAAATGATTCTGGGCCTTCTATGTCATTACATGCTGTTAGTTTACTTCTTGAAGCTGTTTTTCTTAAGGCTAAATCATTGAAGACTCTTGGAAGGTTTCAAGAAGCTGCTCAATCATGCAAAACAATTTTAAATACTATTGAATCTGCATTACCAGAAGGCTGGCCTGAAAACTTTGTTTCAGATTGTAAATTACAAGAGACGGTAACAAAGGCGGTTGAACTGCTTCCGGAGCTATGGAGCCTTGCAGGTTCACCTCAAGATGTTGTCTTATCATTTAGGAAAGCCTTGCTTTATCATTGGAATCTTGACACTGAAGCAACGGCAAGAATACAAAAGGAATTTGCTTTGTTTCTTTTATACAGCGGTTACGAAGCGGACTCTCCTCCGCTTCGGTCTCAGTTAGACGGTTCCTTTGTTCCGAGAAACAACATAGAAGAAGCGGTTCTTCTGCTTCGGATTCTGGTGAGAAGAAAATCGAAAGATCCTTCAATAATCCATCACCTTTCTTTTGCTCAAAGTGTTTGTGGTGAATTCATGACATTAGCACAGCATGTTGAGGAATTGCTTCCAGAAACCAAGGAGAGAAGAGGAAGATATTATACTCTCTCGCTTTGTTACTATGGCGAAGGCGAGAATATGGTTGCTTTAGATCTTTTGAGGAACTTTTTGAATAATAAAGAAAACTCAGTATACTCAGATTGCATAGAGGAATTGCTTTTAATTTCGAAAATCTGCGCAGACAACAAGGTTTGTGTTGAAGACGGAATCAAATTTTCCAGCAAAGCCATTTCTCAGATGAATGGAAAATGCAATCAAATGGAAGCTATTGCAAATTGTTTACTTGGTGTTCTACTGTCAGCGAAATCCAAGTCAATTTCTTCTGAATCCGAGAAAGTTTCGATACAATCCCAAGCATTTAGTGCTCTAAAAGCTTCTGAAAGAATGATGGAGGATAGTGATTCTAATCCTTACATTGTTAATCATCTTTGCCTAGAATATGCTGAACATAGGAAGCTGAGAATCGCTTACGATCATGCAAAAAAATTGATTAAGCTTGAAGGTGGATCTAGTATTAGTGGATATATACTGCTAGCAAGGATTTTATCAGCCCAAAAAAAGTTTTTTGATGCCGAGACTGTTATCGATGCTGCTTTAGAACAAAGTGGAAAATGGGAACAAGGAGAATTGTTGAGGACTAAAGCTAAGATTCAGATTGCACAAGGAAGATTGAAAAATGCTATTGAGACATACACTTTTCTTCTCGCTGTTCTTCAAGTCCAAAACAAAAATCTAGGAACTGCAAATAAGGCAATGAAGTGTAAGCGAAATCGCAACAGAAGACTAGAAATGGAAGTGTGGCATGATTTAACCAATGTATATACAGCTTTGTCGCAATGGTGTGATGCTGAAGTTTGTCTTGCCAAATCTGAAGCTATTGATCCCTATTCTGCTTCTAGATGGCACTCTACAGGTATGCTTTATGAAGCAAGAGGTTTACATCAAGAAGCATTGAAATCATATAGAAAAGCATTGGATATTGATCCCAACCATGTTGCAAGTTTGATATCAACAGCTTGTGTTTTGAGAAAACTTGGTGGTCAATCATCTGGTTCAATTGTTAGAAGCCTTCTCATTGAGGCATTGAGGCTTGATAGAACAAACTCATCTGCATGGTACAATATTGGAGTTGTGTACAAAGATGATTTGGGAACATCAGCATTGGAAGCTGCTGAATGCTTTGAGACAGCTGTTTTTCTTGAGGAATCTTGTCCCATTGAGCCCTTTAGATAA 2319 0.3782 MTQEYEPIEEPVQVSGLNLYTFVSLKSYLFYSYHLYSLPFTAPTIEFGSSMRRKLRKMMKCVCSKDRLSVDEMNYSSESLATRDYSATASGYSSRPGENETKLDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVIPKMKISISRRCESNNKRGLENDSGPSMSLHAVSLLLEAVFLKAKSLKTLGRFQEAAQSCKTILNTIESALPEGWPENFVSDCKLQETVTKAVELLPELWSLAGSPQDVVLSFRKALLYHWNLDTEATARIQKEFALFLLYSGYEADSPPLRSQLDGSFVPRNNIEEAVLLLRILVRRKSKDPSIIHHLSFAQSVCGEFMTLAQHVEELLPETKERRGRYYTLSLCYYGEGENMVALDLLRNFLNNKENSVYSDCIEELLLISKICADNKVCVEDGIKFSSKAISQMNGKCNQMEAIANCLLGVLLSAKSKSISSESEKVSIQSQAFSALKASERMMEDSDSNPYIVNHLCLEYAEHRKLRIAYDHAKKLIKLEGGSSISGYILLARILSAQKKFFDAETVIDAALEQSGKWEQGELLRTKAKIQIAQGRLKNAIETYTFLLAVLQVQNKNLGTANKAMKCKRNRNRRLEMEVWHDLTNVYTALSQWCDAEVCLAKSEAIDPYSASRWHSTGMLYEARGLHQEALKSYRKALDIDPNHVASLISTACVLRKLGGQSSGSIVRSLLIEALRLDRTNSSAWYNIGVVYKDDLGTSALEAAECFETAVFLEESCPIEPFR 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01581 772 MobiDBLite consensus disorder prediction 86 109 - -
Vifa3g01581 772 Gene3D Tetratricopeptide repeat domain 478 768 IPR011990 GO:0005515
Vifa3g01581 772 SMART tpr_5 660 693 IPR019734 GO:0005515
Vifa3g01581 772 SMART tpr_5 192 225 IPR019734 GO:0005515
Vifa3g01581 772 SMART tpr_5 570 603 IPR019734 GO:0005515
Vifa3g01581 772 SMART tpr_5 534 567 IPR019734 GO:0005515
Vifa3g01581 772 SMART tpr_5 626 659 IPR019734 GO:0005515
Vifa3g01581 772 SUPERFAMILY TPR-like 193 593 IPR011990 GO:0005515
Vifa3g01581 772 Pfam Tetratricopeptide repeat 663 693 IPR013105 -
Vifa3g01581 772 Gene3D Tetratricopeptide repeat domain 99 408 IPR011990 GO:0005515
Vifa3g01581 772 ProSiteProfiles TPR repeat region circular profile. 660 693 - -
Vifa3g01581 772 MobiDBLite consensus disorder prediction 86 101 - -
Vifa3g01581 772 SUPERFAMILY TPR-like 571 742 IPR011990 GO:0005515
Vifa3g01581 772 ProSiteProfiles TPR repeat profile. 660 693 IPR019734 GO:0005515
Vifa3g01581 772 PANTHER PROTEIN NPG1 59 772 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01581 Vifa-Chr3 408841927 408845276 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01581 51 772 Calmodulin-binding Proteins AT4G28600 50.744 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01581 K21843 - gmx:100789469 1082.01