Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01578 ATGAATTCAAGTGAAGAAGGTGATGAAGATCATGATCAAGGAAAAAAACGTTGTTATGAATGCACATTTTGCAAAAGAGGGTTCACAAATGCTCAAGCTTTAGGTGGCCACATGAATATTCATAGGAAAGACAGAGCAAAAAGTAACAAAAAACCACAAATTGGTAACAAATTCTTCACCAATGATGAAACTACTTCTGTGGCTTTTCCTTTTGTTTCATCAAATTCTCCACCTATGAGGCAAATGCAACAATGTTTACCAACAACAACACCAAATTATCTTGCTGAAAATTACCAACTTTCAAATGTGCATGGTTTTGGATATGATCAATTTCCAAGATCTTCTTCATTTAATTGGCCTAATTTGCATTTTAATCAAGAGCTTCAAGGTCCTAATTTGAGTCTTCAAATTGGTCCTAGTCATCAAATAATTAGGAGAGGAAATCAAGAAGAAAATGAAGTTGATTTGGAGCTCAGGCTTGGACATGATCCATGA 495 0.3475 MNSSEEGDEDHDQGKKRCYECTFCKRGFTNAQALGGHMNIHRKDRAKSNKKPQIGNKFFTNDETTSVAFPFVSSNSPPMRQMQQCLPTTTPNYLAENYQLSNVHGFGYDQFPRSSSFNWPNLHFNQELQGPNLSLQIGPSHQIIRRGNQEENEVDLELRLGHDP 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01578 164 Gene3D Classic Zinc Finger 6 73 - -
Vifa3g01578 164 PANTHER OS07G0101800 PROTEIN 15 163 - -
Vifa3g01578 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Vifa3g01578 164 SMART c2h2final6 19 41 IPR013087 -
Vifa3g01578 164 SUPERFAMILY beta-beta-alpha zinc fingers 16 45 IPR036236 -
Vifa3g01578 164 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01578 Vifa-Chr3 408598076 408598570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01578 19 161 C2H2 Transcription Factor Family AT5G43540 36.552 4.65e-16 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g01578 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01578 - - psat:127093235 306.219