Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01552 ATGGAACGTGGAGTTGTTGATGGTATTATCAGTAGGTTGCTTGAAGTGAGAGGAAGACCAGGGAAACAGGTGCAGCTTTCTGAGGCTGAAATCAAACAGCTTTGTCTTGTTTCTAAGGATATCTTCTTGAATCAGCCTAATCTCTTGAAACTAGAGGCACCTATTAAAATCTGTGGAGATGTCCATGGTCAATATCCTGACCTTCTGCGGCTTTTCGAGTATGGTGGATTGCCTCCTCGTTCCAATTATTTATTCCTGGGAGACTACGTTGATCGCGGAAAGCAAAGTCTAGAAACAATATGTCTTCTTCTGGCATACAAAATAAAATACCCTAGAAACTTTTTCCTTCTAAGGGGTAACCACGAATGCGCTTCCATAAACCGTGTCTACGGATTTTATGACGAGTGCAAAAGGAGATACAATGTGAAGCTATGGAAAACGTTTACAGATTGTTTCAACTGTTTGCCCGTGGCAGCTCTCATTGACGAAAAGATTATCTGTATGCACGGTGGACTCTCTCCTGAACTAAACAATTTGAATCAGATAAAGAATTTGCAACGTCCATGTGAAGTTCCTGAATCCGGTCTATTATGTGATCTCCTATGGTCTGATCCTAGTAGCGATGTTCAAGGCTGGGGAGAAAGTGAACGCGGAGTTTCTTATACGTTTGGCACTGATAGGGTTAGAGAGTTTCTTCAAAAGCATGATCTTGATTTGATTTGCAGGGCTCATCAGGTTGTGGAAGATGGATATGAGTTCTTTGCTAATAGACAACTTGTAACAATCTTTTCAGCACCGAATTACTGTGGAGAGTTTGATAATGCTGGTGCTATGATGTCTGTTAATGAAACACTTATGTGTTCTTTTCAAATACTAAAGCCATTTGATAAAAAGCCTAAGTTTACGATCGGAAGCACGACTACTATTAAGCCTGGTACTCCTACAAAATTCAAGCAAACACTTTTTGGTGCTAAAGCATGA 981 0.4047 MERGVVDGIISRLLEVRGRPGKQVQLSEAEIKQLCLVSKDIFLNQPNLLKLEAPIKICGDVHGQYPDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPRNFFLLRGNHECASINRVYGFYDECKRRYNVKLWKTFTDCFNCLPVAALIDEKIICMHGGLSPELNNLNQIKNLQRPCEVPESGLLCDLLWSDPSSDVQGWGESERGVSYTFGTDRVREFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVNETLMCSFQILKPFDKKPKFTIGSTTTIKPGTPTKFKQTLFGAKA 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01552 326 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Vifa3g01552 326 Gene3D - 2 305 IPR029052 -
Vifa3g01552 326 FunFam Serine/threonine-protein phosphatase 1 303 - -
Vifa3g01552 326 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 298 - -
Vifa3g01552 326 SMART pp2a_7 26 296 IPR006186 GO:0016787
Vifa3g01552 326 CDD MPP_PP1_PPKL 5 294 - -
Vifa3g01552 326 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Vifa3g01552 326 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Vifa3g01552 326 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Vifa3g01552 326 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Vifa3g01552 326 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Vifa3g01552 326 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Vifa3g01552 326 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Vifa3g01552 326 SUPERFAMILY Metallo-dependent phosphatases 17 299 IPR029052 -
Vifa3g01552 326 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Vifa3g01552 326 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01552 Vifa-Chr3 405197699 405200282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01552 33 237 Calmodulin-binding Proteins AT5G63870 31.020 1.01e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01552 K06269 - gmx:100791655 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01552 3 405197699 405200282 Vifa3g01552 3 405197699 405200282 ECH