Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01549 ATGAACTCAATCACAAACCCTTCCTCTTCATTCGAATTCAACTATCTCCCCTTCAACGAGAACGATCCCGAAGAGATGCTTCTCTACGGCATGATCAACGACGCAAACACCACCCTCACCAGCACCAGAGTCACCAGAGTCAAGGAAGAAGAGGCAAGTTCCGAAGAGAACGAACCGCGGAAGGAGAAATCCTACCGCGGTGTTCGAAGAAGACCATGGGGGAAATTCGCAGCCGAAATAAGGGATTCAACGAGAAATGGAATGAGGGTTTGGTTAGGAACATTTGACAGTGCTGAAGCAGCTGCTTTAGCTTATGATCAAGCTGCTTTTGCCATGAGAGGCTCTTCTGCTATACTCAATTTTCCTGTGGAGATTGTGAGAGAATCGCTTAATGATATGAATTGCGATGAATGTTCTGAAGATGGTTGTTCACCTGTTGTTGCTCTTAAGAGGAAACATTCTTTGAGAAGGAAAATTGGGTTCGCCAAGAACAAAGAACAAGATTTTAGAAACAAGAACAATAGTAATAACAATAATAAAAGTGTTGATAATGCTGTCGTGTTCGAAGATCTTGGTTCTGATTATTTGGAACAATTGTTGATGTCTTCCGATGAATTTCCTTGTCCACAATGA 633 0.4234 MNSITNPSSSFEFNYLPFNENDPEEMLLYGMINDANTTLTSTRVTRVKEEEASSEENEPRKEKSYRGVRRRPWGKFAAEIRDSTRNGMRVWLGTFDSAEAAALAYDQAAFAMRGSSAILNFPVEIVRESLNDMNCDECSEDGCSPVVALKRKHSLRRKIGFAKNKEQDFRNKNNSNNNNKSVDNAVVFEDLGSDYLEQLLMSSDEFPCPQ 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01549 210 SMART rav1_2 64 128 IPR001471 GO:0003700|GO:0006355
Vifa3g01549 210 FunFam Ethylene-responsive transcription factor 2 63 124 - -
Vifa3g01549 210 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Vifa3g01549 210 Gene3D AP2/ERF domain 63 124 IPR036955 GO:0003700|GO:0006355
Vifa3g01549 210 MobiDBLite consensus disorder prediction 44 66 - -
Vifa3g01549 210 PANTHER DNA-BINDING DOMAIN 49 201 IPR044808 GO:0003700|GO:0009873
Vifa3g01549 210 MobiDBLite consensus disorder prediction 44 65 - -
Vifa3g01549 210 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Vifa3g01549 210 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vifa3g01549 210 PRINTS Ethylene responsive element binding protein signature 104 124 IPR001471 GO:0003700|GO:0006355
Vifa3g01549 210 ProSiteProfiles AP2/ERF domain profile. 64 122 IPR001471 GO:0003700|GO:0006355
Vifa3g01549 210 SUPERFAMILY DNA-binding domain 64 124 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01549 Vifa-Chr3 403893967 403894599 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01549 16 204 AP2-EREBP Transcription Factor Family AT3G23240 59.788 1.03e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g01549 AP2 6.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01549 K14516 - gmx:100790598 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02671 5 888035983 888036645 Vifa3g01549 3 403893967 403894599 ECH
Vifa3g01314 3 337822459 337823136 Vifa3g01549 3 403893967 403894599 ECH
Vifa3g01549 3 403893967 403894599 Vifa3g01549 3 403893967 403894599 ECH