Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01548 ATGGAGGATCACCAAAAGGGAAAGCAAGGCAAGGAGGAGAAGGGCAAGGACGAGGTTCGGTTCCGAGGTGTTCGAAGGAGGCCGTGGGGGAAGTATGCGGCGGAGATAAGGGATCCATCCAAACAAGGGACAAGGATATGGTTAGGGACATTTGACACTGCTGAAGAAGCAGCAAGAGCTTATGATAAAGCAGCTTTTAACTTGAGGGGTCATCTTGCAATTTTGAATTTTCCTAGTGAATACTATTCTAAAATAAGAGGCTCACCACCATATCCACCTCATTTAGCACCACCATCCTACACCTCATCTCATCATGCTAGTGGAAGTTCTTCTAGGCCCATATTTGAGTTTGAGTGTTTGGATGATAAGATATTGGAAGAACTTCTTGGGTCAGAGGAGATGAAGAAGAAAAAGAAGGGAGAATGA 426 0.4484 MEDHQKGKQGKEEKGKDEVRFRGVRRRPWGKYAAEIRDPSKQGTRIWLGTFDTAEEAARAYDKAAFNLRGHLAILNFPSEYYSKIRGSPPYPPHLAPPSYTSSHHASGSSSRPIFEFECLDDKILEELLGSEEMKKKKKGE 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01548 141 CDD AP2 20 78 IPR001471 GO:0003700|GO:0006355
Vifa3g01548 141 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g01548 141 SMART rav1_2 20 84 IPR001471 GO:0003700|GO:0006355
Vifa3g01548 141 ProSiteProfiles AP2/ERF domain profile. 20 78 IPR001471 GO:0003700|GO:0006355
Vifa3g01548 141 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Vifa3g01548 141 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Vifa3g01548 141 PANTHER DNA-BINDING DOMAIN 9 125 IPR044808 GO:0003700|GO:0009873
Vifa3g01548 141 Pfam AP2 domain 20 71 IPR001471 GO:0003700|GO:0006355
Vifa3g01548 141 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Vifa3g01548 141 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Vifa3g01548 141 MobiDBLite consensus disorder prediction 86 111 - -
Vifa3g01548 141 FunFam Ethylene-responsive transcription factor 2 19 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01548 Vifa-Chr3 402478143 402478568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01548 18 136 AP2-EREBP Transcription Factor Family AT3G23230 63.415 7.68e-51 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa3g01548 AP2 7.3e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01548 - - gmx:100776376 181.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01548 3 402478143 402478568 Vifa3g01548 3 402478143 402478568 ECH