Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01547 ATGAATAACGATGAATCAAAGGGAAGGACCAACAATGACGGCGGAAATGTCCGATACCGTGGCGTCCGCTGCCGACCGTGGGGGAAGTTTGCGGCCGAGATTCGCGACTCCAACAGGCAGGGCCAGAGAGTTTGGCTTGGAACATTCAACACTGCTGAGGAAGCTGCTAGAGCTTATGATAGAGCTGCTTATAATATGAGAGGTACATTTGCAATCCTTAATTTCCCGCATGAATACAATATGGGTGCTGGTGCCGGTGCCGGTTCCGGTTCGGGTTCCGGTGCCACTTCTTCTTCCTCTACAAGGAATGCAAATGTGGATGGTAGAGGAAGACAAGTGTTTGAATTTGAGTACTTAGATGATAAGTTGCTGGAGGAGCTTCTTGATTTTGAAGAGAAGAAAAAATAA 408 0.4755 MNNDESKGRTNNDGGNVRYRGVRCRPWGKFAAEIRDSNRQGQRVWLGTFNTAEEAARAYDRAAYNMRGTFAILNFPHEYNMGAGAGAGSGSGSGATSSSSTRNANVDGRGRQVFEFEYLDDKLLEELLDFEEKKK 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01547 135 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Vifa3g01547 135 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vifa3g01547 135 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vifa3g01547 135 MobiDBLite consensus disorder prediction 90 106 - -
Vifa3g01547 135 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Vifa3g01547 135 MobiDBLite consensus disorder prediction 83 106 - -
Vifa3g01547 135 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Vifa3g01547 135 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
Vifa3g01547 135 PANTHER DNA-BINDING DOMAIN 12 131 IPR044808 GO:0003700|GO:0009873
Vifa3g01547 135 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Vifa3g01547 135 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Vifa3g01547 135 FunFam Ethylene-responsive transcription factor 2 17 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01547 Vifa-Chr3 402019415 402019822 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01547 13 135 AP2-EREBP Transcription Factor Family AT3G23230 61.111 3.90e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g01547 AP2 8.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01547 - - gmx:100775830 140.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01547 3 402019415 402019822 Vifa3g01547 3 402019415 402019822 ECH