Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01544 ATGGATCTTGTAAGTAGAAGATTCTTGATCCATTTTTCACAACATGGGTCAGAATCACAATCACAAGCTATTTCTCCAATACCAAGTACTTCAAGTTCAATTTTTCATCATTCTAGCACAAGTTTTCCAATTATCGCTATTGCGATAATTGGAATCTTAGCAACAGCTTTCTTGCTTGTTTCCTACTACATCTTTGTAATCAAATGTTGTCTCAGTTGGCACCGTATCGATCTTCTCCGTCGATTCTCACCGTCTCGAAGACGACAAGATCCGACCACAACATACTCACCGGGGTTAGAGCCTCGCGGCCTAGACGAGGCCGTGATTAGGTTAATCCCGGTGATTCATTTCAAAACAGAAGATGAAAATAGAGAGTCTTCTGAATGTGCTGTTTGTTTGAATGATTTTCAACAAGATGAGAAGCTTAGGATTATACCGAATTGTAACCATGTTTTTCATATTGATTGCATTGATGTTTGGTTACAAAACAATGCTAATTGTCCACTGTGTAGAACAAGCATTTCTTTGACAAAAGGATACCATTTTGATCAAATGCTCACACAACAAAATCCTTATTCAGTTTCATCTCAAGATCAAAATTCACATAATGATGAAGGTTTTGTTGTCATTGAATTGAGTAACAATGATGCAATAGAGTTACCATTACCATTGCCATTACCAAGAGCAAATTCTATTAGTCCTTCGCCGAGAAAAAGTCGAAAAAAGTTGCATAAATTGACAAGTATGGGAGATGAATGTATTGATATTAGAGCAACAAAAGATGAACAATTTTCAGTTCAACCAATTAGAAGATCTTTCTCAATGGATTCATCAGGAGATAGACAGTTTTATCTTGCAGTTCAAGAAGCTCTGCATCAACAAAAGAGGGGTGTCAATGAAGTTAACAACTCCATTGAAGGATGCAGTGGTGGTGGAAGTGGTGGTTGTGGTGGTGGTGGTGGTGGAAGTGGAAGAGTGAAGAAACCATTTTTTTTATTTGGATATGGAAGTAGATCTAGAAGTTCTGTTCAACCTGTTTATTTAGATTCTTAA 1053 0.3713 MDLVSRRFLIHFSQHGSESQSQAISPIPSTSSSIFHHSSTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLSWHRIDLLRRFSPSRRRQDPTTTYSPGLEPRGLDEAVIRLIPVIHFKTEDENRESSECAVCLNDFQQDEKLRIIPNCNHVFHIDCIDVWLQNNANCPLCRTSISLTKGYHFDQMLTQQNPYSVSSQDQNSHNDEGFVVIELSNNDAIELPLPLPLPRANSISPSPRKSRKKLHKLTSMGDECIDIRATKDEQFSVQPIRRSFSMDSSGDRQFYLAVQEALHQQKRGVNEVNNSIEGCSGGGSGGCGGGGGGSGRVKKPFFLFGYGSRSRSSVQPVYLDS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01544 350 CDD RING-H2_EL5-like 128 171 - -
Vifa3g01544 350 Pfam Ring finger domain 128 171 IPR001841 -
Vifa3g01544 350 SUPERFAMILY RING/U-box 120 180 - -
Vifa3g01544 350 PANTHER RING-H2 FINGER PROTEIN ATL16 25 346 IPR044600 GO:0016567|GO:0016740
Vifa3g01544 350 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Vifa3g01544 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 178 IPR013083 -
Vifa3g01544 350 FunFam E3 ubiquitin-protein ligase ATL6 93 177 - -
Vifa3g01544 350 SMART ring_2 129 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01544 Vifa-Chr3 400853674 400854726 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01544 1 298 C3H Transcription Factor Family AT1G04360 47.977 1.58e-89 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01544 - - gmx:100775286 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01544 3 400853674 400854726 Vifa3g01544 3 400853674 400854726 ECH