Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01542 ATGGAGCAAAAAACCTTTCCTTCTCTTCATCTTTTCACAAAGTTCAAACCACACATGCTCATGATCTTAACCCAAATTTCCTATACTTTCTTATATTTCATCACTGAAGCTTCCTTTAATCATGGAATGAGTCCTTATGTTTATGTTACTTATCGCCATGCTATCGCCGGGGTTGTCATGTTTCCTTTCGCGTATTTTCTCGAAAGAAAATTAAGACCAAAGTTGACATTGGCTCTATTTATGGAGATTTTTCTGCTTTCAGCGTTAGGGATGAGTGTGTCTATGAACTTGTACTTTGCTAGCTTGAAGTATACTTCTCCAACCTTTCTTTCTTCCATGTACAACACCATATCTTCTCTCACCTTCATTATTGCAGTAGTACTAAGGTTTGAGGTTATTGATCTTGGAAATCCACGTGGCATAGCGAAAGTACTTGGAACTATAGTGTCCTTAGCAGGAGTTATGACCATGACACTATATAAAGGAGCTATAATCAGAAATTTGTGGCATCCTCTAATTCAAATTCCACCAAAAAGTGTTTCTATCAATGAAAGTAGCTTAAAGGGTTCACTTCTCACAGTTTCATGTTGTGTTTTGTTTTCTATCTCCTACGTCATGCAGGCATCCACTTTGAAAAGATATCCAGCACAATTGTCACTCACAACATGGTTGTGTTTTATTGGAGGAGCACAGTCAGCTGTTTTCACAGTGATAGCAGAACACAATAACCCTTCAGCATGGATTATAGGATTCAACTTTGACTTTTGGTCAACAATATATGGGGGAATTATTGTTGGTGGTTTTTTCATATACGTTAACCTATGGTGCACTGAGAAAAAAGGACCAGTTTTTGTCACGGTGTTTAACCCTCTTAGTACTATATTTGTGACAATTGTAGCATATTTCGTCGTTGGTGAAAAACTTTATTTGGGCAGTATCATAGGTGCAATTATTGTGATCACGGGTTTGTACTTGTTGTTGTGGGGTAAAGAAGGTGACAATGAGGTTGATTTCAAGGCCAAAGATAAATTGCACTTGCAGTACAATATTGAAGACCTTGAAGAATGCAAAATGTAG 1077 0.3742 MEQKTFPSLHLFTKFKPHMLMILTQISYTFLYFITEASFNHGMSPYVYVTYRHAIAGVVMFPFAYFLERKLRPKLTLALFMEIFLLSALGMSVSMNLYFASLKYTSPTFLSSMYNTISSLTFIIAVVLRFEVIDLGNPRGIAKVLGTIVSLAGVMTMTLYKGAIIRNLWHPLIQIPPKSVSINESSLKGSLLTVSCCVLFSISYVMQASTLKRYPAQLSLTTWLCFIGGAQSAVFTVIAEHNNPSAWIIGFNFDFWSTIYGGIIVGGFFIYVNLWCTEKKGPVFVTVFNPLSTIFVTIVAYFVVGEKLYLGSIIGAIIVITGLYLLLWGKEGDNEVDFKAKDKLHLQYNIEDLEECKM 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01542 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 161 - -
Vifa3g01542 358 PANTHER WAT1-RELATED PROTEIN 17 333 IPR030184 GO:0016020|GO:0022857
Vifa3g01542 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 229 330 - -
Vifa3g01542 358 Pfam EamA-like transporter family 18 157 IPR000620 GO:0016020
Vifa3g01542 358 Pfam EamA-like transporter family 188 327 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01542 Vifa-Chr3 400380102 400381959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01542 12 354 Nodulin-like Gene Family AT5G07050 42.090 2.94e-90 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01542 - - gmx:100527877 521.931