Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01535 ATGGAATGTTCCAAAGATTATGCCTTAAGGACTAAAAGGATGGAAAAGAAGAGGTTCTTACAGGAACATTTTGGTGTTGCAAAACTACTTGCAACGAAGGCTCGGCCCTGCGAGGTTCATGGTGCACAGCCCTTGGATGATGATAAAACTATTCGGAAATGTTACAGGCAGATGGCTCTTACTCTGCATCCGGATAAAAACAAGTCGGTGGGTGCAAATGGCACATTTAAGCTGGTTTCTCAGGTGTGGACTGTATTATCTGATAAAGCTAAGAGAGCCGCCTTTGATCAAAAGTGCCGCTTATGGGAGTCCTTCAAAAGAATTATTGGTGGTATACGTATACCTTGGAATAGTTTGTTTGATACTGCTAACCTTGGTGGGAAATCTTCTGAACCTGCTACTCAGGGTGGTTTGTTTAAGCTGCTAACCGGAAGGACAGATCTCGCGAGTGGCGCTCATACCAATCCTACTCCAAGACCTTTTGTACCTACTAGTTATAATGGTTTGTTTAATTCTCCTATCGGGAAGGACATAGATCATATGAGTGCAATTTCTGCAGGACACACTATGAGTACTTTGCTGTTTATAGAAACTGCAAAATTGTCCTTTTTCTATGCCGAGTGGCATTTCCAGTGGACCGACATCAGTTTCTACGCTTCTGGAGCTCTTGGTCTTTTTAACAGACCATCTGTGAATTTGAAGAGAAGGCATGAAGATTCGACACCTCTCATGAATGAGGAGACACATTTTGGGAAAACTCATGTTGTTGAAAGAGCTGTTGCGGGTTCATATTTTCATCCCTCTTGGAAAGAAGAAAAAAAAGGTGCACAGGAGAGTCTTAGAAAGCTTGATGAGTGGAAGGTAATTTGTAAGAAGCTTGATGAACGGTATCCGTCTTCTATATTAAATAATACTGGTGCAGAAGTCAAAGTGAAGGAGAAAGAAAAGACTATTAATAGTGTGAAGCCTGGTCCAAAAGAAATTGTTGATTCTGAAACCAACAACAACTATATCACTGCTGATTCAGAGGAACCTCTTTCTGTCTCAATGAGTGTTCCAGACCCAGATTTCCATGACTTCGATGGGAACCGAATAGAGGACACTTTTGGTGAGAACCAAGTGCGGGCTGCATATGACGATGAAGATGGCATGGCATGCTACTATGCCTTTATCCAGTGTGATCTCAAAGAATCCATTCCAAGTGAAGATAACCTGGCTGAGCTCTAA 1227 0.4205 MECSKDYALRTKRMEKKRFLQEHFGVAKLLATKARPCEVHGAQPLDDDKTIRKCYRQMALTLHPDKNKSVGANGTFKLVSQVWTVLSDKAKRAAFDQKCRLWESFKRIIGGIRIPWNSLFDTANLGGKSSEPATQGGLFKLLTGRTDLASGAHTNPTPRPFVPTSYNGLFNSPIGKDIDHMSAISAGHTMSTLLFIETAKLSFFYAEWHFQWTDISFYASGALGLFNRPSVNLKRRHEDSTPLMNEETHFGKTHVVERAVAGSYFHPSWKEEKKGAQESLRKLDEWKVICKKLDERYPSSILNNTGAEVKVKEKEKTINSVKPGPKEIVDSETNNNYITADSEEPLSVSMSVPDPDFHDFDGNRIEDTFGENQVRAAYDDEDGMACYYAFIQCDLKESIPSEDNLAEL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01535 408 ProSiteProfiles dnaJ domain profile. 35 99 IPR001623 -
Vifa3g01535 408 PRINTS DnaJ domain signature 55 70 IPR001623 -
Vifa3g01535 408 PRINTS DnaJ domain signature 71 91 IPR001623 -
Vifa3g01535 408 PRINTS DnaJ domain signature 37 55 IPR001623 -
Vifa3g01535 408 Pfam Domain of unknown function (DUF3444) 349 392 IPR024593 -
Vifa3g01535 408 SUPERFAMILY Chaperone J-domain 41 114 IPR036869 -
Vifa3g01535 408 CDD DnaJ 47 88 IPR001623 -
Vifa3g01535 408 PANTHER BNAC03G44070D PROTEIN 1 393 - -
Vifa3g01535 408 SMART dnaj_3 34 91 IPR001623 -
Vifa3g01535 408 Gene3D DnaJ domain 34 100 IPR036869 -
Vifa3g01535 408 Pfam DnaJ domain 45 96 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01535 Vifa-Chr3 398766019 398767669 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01535 47 101 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 43.636 1.43e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01535 - - lang:109358929 207.994